Query= MSMg01no144_c03.b1 MSMg01no144_c03.b1 CHROMAT_FILE:
MSMg01no144_c03.b1 PHD_FILE: MSMg01no144_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:52 2005
(371 letters)
>mm_chr17_37812388_37813158
Length = 771
Score = 688 bits (356), Expect = 0.0
Identities = 365/368 (99%)
Strand = Plus / Plus
Query: 4 gaattctctccattcctcttcccctgaattcatattagtcttaccaggagataacactcc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctctccattcctattcccctgaattcatattagtcttaccaggagataacactcc 263
Query: 64 ccctctcccttttttaccccacctccaaatccttctgagtgacctcatcaggtagatctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccctctcccttttttaccccacctccaaatccttctgagtgacctcatcaggtagatctt 323
Query: 124 tcattggggcatagggaaggtgtagcatggtacaattggctgaggatttagagaatttag 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcattggggcatagggaaggtgtagcatggtacaattggctgaggatttagagaatttat 383
Query: 184 atcgcctcaaacaatgtatatattcaagaatattgcacaataaatccagatatgcacgta 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcgtctcaaacaatgtatatattcaagaatattgcacaataaatccagatatgcacgta 443
Query: 244 ctattggtccctggagctggtttcttgggattcatcatgcaattctgtcacctctcaacc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctattggtccctggagctggtttcttgggattcatcatgcaattctgtcacctctcaacc 503
Query: 304 ctatccttttccctgaaaatcaaaacatctacttccattcctccaagttcaataccccat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctatccttttccctgaaaatcaaaacatctacttccattcctccaagttcaataccccat 563
Query: 364 cccctttt 371
||||||||
Sbjct: 564 cccctttt 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_c03.g1 MSMg01no144_c03.g1 CHROMAT_FILE:
MSMg01no144_c03.g1 PHD_FILE: MSMg01no144_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:52 2005
(430 letters)
>mm_chr17_37962292_37963116
Length = 825
Score = 625 bits (323), Expect = 0.0
Identities = 404/441 (91%), Gaps = 22/441 (4%)
Strand = Plus / Minus
Query: 1 tagatagtagtaatgtaaactttacatactcatcttcataaattattatttttagctcct 60
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 526 tagatagtagtaatgtaaactttacatactcatcttcataaatt-tt-tttttagctcct 469
Query: 61 tacagcacagtatgtttggttctaaggctgctgttcttttgctagcagtaagaatgaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 468 tacagcacagtatgtttggttctaaggctgctgttcttttgctagcagtaagaataaatt 409
Query: 121 cattcaatctacatttgagtcaagtctaagtctttggtctttttcattggtttctaatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cattcaatctacatttgagtcaagtctaagtctttggtctttttcattggtttctaatgg 349
Query: 181 tataacactaggatatattcatgtaaaaatatgaactgtatttatgtgatcaaaaattca 240
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 348 tataacactaggatatattcatgtagaaatatgaactgtatttatgtggtcaaaaattca 289
Query: 241 aggtgattttttttttacatccaatctctgaaatacttctggcaagtgtgtgatgtgaat 300
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 288 aggtgattttttt---acatccaatctctgaaatatttctggcaagtgtgtgatgtgcat 232
Query: 301 agaatcaagtatatcttttgttttgtaaatc--------caccagcc-aa----ccccca 347
| |||||| || | ||||||| ||||||||| |||||||| || | |
Sbjct: 231 acaatcaaatagaccttttgtattgtaaatctggtggtccaccagcctaagtttc----a 176
Query: 348 gcatcttatcaccagaaattacctttttatcttacctgtgggaacttacaccatcacctg 407
|||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gcatctcagcaccagaagttacctttttatcttacctgtgggaacttacaccatcacctt 116
Query: 408 tcactgccaggtgtggtatat 428
||||||||||||||| |||||
Sbjct: 115 tcactgccaggtgtgatatat 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 825
Length adjustment: 9
Effective length of query: 421
Effective length of database: 816
Effective search space: 343536
Effective search space used: 343536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
