BAC Information

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BAC

Clone NameMSMg01-144K05
Chromosome17 (Build37)
Map Location 92,104,306 - 92,104,594
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
Downstream geneEG640442, LOC627395, LOC676141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144K05.T7 (MSMg01no144_k05.b1)MSMg01-144K05.TJ (MSMg01no144_k05.g1)
ACCAG348656AG348657
length717718
length of high quality
(start - end)
374 (46 - 419)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no144_k05.b1 PHD_FILE: MSMg01no144_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:31 2005CHROMAT_FILE: MSMg01no144_k05.g1 PHD_FILE: MSMg01no144_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTCAGTATCTTTCCTGCTTTAGCCTGTGAAGAGGCACTCAGCTCTC
GAGATTGCCACATCCAGTGAGGGTTGGTGCAAGTTATGCACAACCACTAG
ACATTCATGTGGTCCCCAGTAGCTGCTCCAAGCAGAGACATACCCATGTA
CTCTAGTAGTAATAGAGCCATAGACATTGACACTGACCTTTGTCCCTGTA
AAGCCATGGACCCAGATGTGGCCCTCAGCTGCAACGGTATCTTGGACTTC
ACTATGGCCCCAGGGTATTCAAAACAGGATACTTCTCCCCACCATCAAGT
TCCATCTTTCTTCATAATGGTCAAGCTGCTCCACTTCTCTTTGTCACCCA
TGTAACCACTGCATTCTTACTCACCGTGGTGTCTTCTACTGCTGGATAGC
CACAAGGCTGGATGATACCCTCCATTTGTGCTACATAAAGTTGCTATAAG
CGTGTGCCTAGGAACTGGCTGTGCTGGGAGCTGAAGGGTACGTCTGTGGC
CGGCATGTTTGTCCACAGGCCTCTGACTTCCTCCTTCTATGCTGTACTGC
CTGGATTTGATTTGACTTGACTTGATTAAATTTTAAGGAGTCCTAGACAT
AATACAGTTTTGGTTCTTCACCTAACCTCAAACTAGGAAAAATAGACTGT
CCCTACTCTGTGCTGTT
NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTCTAGTCACAACAAGCTTGTTAA
AAGAATCTATCATTCTCAAAACTCACTATCCTTCCTTCCTTAGCAGCTTG
CATATTTAGAATTTTTGCATTTTCATTTTTCATATAAATAAATTCTTTTC
AACCGATGTATTTTACTTACTGTTTGTCTTCCTCAAATATTTCACATCTG
AATTTAAACCTTCTCTGATTCACTTTATAAAAAAGACATCTAATTAATGA
TAATAATAATAATAAATCACGAGGAAGAGGATGATAAGAAAATATAAAAC
AAATTGAACAGGATAAAATACATAGAATAAAAGAGCAATAGAATAACAAT
AAGAAGTAGATATAGATGCACAGACTGACCTCTTCACATGAACACACTGT
AATCCCATAAAACCACAAAACTGGAAGTCATAATGTAGGCATGAACGATC
TTTAAGGTTAAAAAAGAACGGAAAATGCCCTAACAAAAACTTAAGATACA
TTAATCTCTAATAATCCTACTTAGTTCATTTTGCGTTGGCCATTGAATGC
TGGGCATGGTCATTACCTATACATAAGTACTATTTTAATCCACTGTTACA
CATTATTGCAGAGAAAGAATTTTTCATATGCAAGTGGCTACTCAATTGCA
GATAGTTTTCCGCACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_k05.g1 MSMg01no144_k05.g1 CHROMAT_FILE:
MSMg01no144_k05.g1 PHD_FILE: MSMg01no144_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:31 2005
         (291 letters)



>mm_chr17_92104106_92104796
          Length = 691

 Score =  489 bits (253), Expect = e-143
 Identities = 280/289 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctagtcacaacaagcttgttaaaagaatctatcattctcaaaactcactatccttc 60
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctctctagtcacaacaagttttttaaaagaatctatcattctcaaaactcactatccttc 430

                                                                       
Query: 61  cttccttagcagcttgcatatttagaatttttgcattttcatttttcatataaataaatt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 429 cttccttagcagcttgcatatttagaatttttgcatttttatttttcatataaataaatt 370

                                                                       
Query: 121 cttttcaaccgatgtattttacttactgtttgtcttcctcaaatatttcacatctgaatt 180
           |||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 369 cttttcaaccaatatattttacttactgtttgtcttcctcaaatctttcacatctgaatt 310

                                                                       
Query: 181 taaaccttctctgattcactttataaaaaagacatctaattaatgataataataataata 240
           |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 309 taaaccttttctgattcaccttagaaaaaagacatctaattaatgataataataataata 250

                                                            
Query: 241 aatcacgaggaagaggatgataagaaaatataaaacaaattgaacagga 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aatcacgaggaagaggatgataagaaaatataaaacaaattgaacagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)