BAC Information

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BAC

Clone NameMSMg01-145D24
Chromosome17 (Build37)
Map Location 21,704,295 - 21,704,557
singlet/doubletsinglet
Overlap geneBC049807
Upstream geneEG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145D24.T7 (MSMg01no145_d24.b1)MSMg01-145D24.TJ (MSMg01no145_d24.g1)
ACCAG349101AG349102
length687688
length of high quality
(start - end)
256 (49 - 304)72 (183 - 254)
definitionCHROMAT_FILE: MSMg01no145_d24.b1 PHD_FILE: MSMg01no145_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:17 2005CHROMAT_FILE: MSMg01no145_d24.g1 PHD_FILE: MSMg01no145_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAATCCG
CGGAATTCTGCTGTGTTGCCTTCCCTTCTCGATAACTTTTAGCTCACATA
AATTGGATTAATCCTGATTTTTTTAATGTTTTAATTGCAAAATATTTTTA
GAATACTGTAGTAGAATATTTGAATTTATCTATTGTTATTTGCAAACCCC
TTCTGTTTTTTGAGGTGAAAAGAAAGAGGTCTTGAAATTGCATTCATCCA
CTCTAACTCCCCTCTTATACCTGGAGACTCACAGTGAAAGTATATTTTTT
GCAGGATACATAGGTATGGTTGTAAACATCATCATTTATAACTAAGTCTT
TATTTCTCGGTAGTAGTTTATTTACAGCTCTATCGCAGCCCCTCCCCCCT
GGTCCCCCACCCCGGCCCCACACTCTCTTTCCAGTCCAAACCTCAGATAA
TATTTTACTTGAGTAAGCATGTAAGTGACGCTGTCCTTATTCCATGCACA
TCACTGATCAGGTCTACGTACCAATATTAAATGGTGTTCACTTTTATGAT
TTAATATATTATAAAATTATGATGATTAGTACCTCTAGATGTAATATTTA
ATGTTGTTTGGAGCTTTTTGGTATTCTAGCACCTTTTCTACTTTTTAGTG
TTCATATTTCTGTTCTTGCAAATAATGCCAAGAGACT
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTC
GGCGTGTAATAGAGGGGAGATGGGCAAGCAACGAACCAGGAGCTGTCACG
CCATATCAGGTGCTGAAACGCCACGCTGCGAGTTATAAAAGCAGCGCCAT
TTTCCCGGTTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGC
GGAAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGTACGCAAT
AAAGGCTACATGGCGAGACCCCATGGCTTTCTTTTCTATTTCCGGGATAA
GAAACACACACACACACTCACACACACACACACACACACACACGTGCGCG
TGCACGCAACACTGACCTAAATGCTCCATTGTTGTTTTTTTTTTTCGAGA
CAGGATTTCTCTGAGTACCCCTGACTGTCCTGAAACTTACTCTGTAAACC
AGGCTGGCCTCGAACTGAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTG
GCATTATAGGTGTGAGCCACCACGCCCGATTAAGACTGACCTAATTGTAC
TACTTAGTATATCTATACCTTAACCGTCTATTCTTTCTTATAAGGAACAT
ATCCAAGATCAATCTTTCAAAGCATGTAGAGCATTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_d24.b1 MSMg01no145_d24.b1 CHROMAT_FILE:
MSMg01no145_d24.b1 PHD_FILE: MSMg01no145_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:17 2005
         (256 letters)



>mm_chr17_21704117_21704774
          Length = 658

 Score =  139 bits (72), Expect = 1e-37
 Identities = 208/266 (78%), Gaps = 33/266 (12%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgctgt-gttg-c---cttcccttctcgataacttttagctcacataaattgg 58
           ||||||||||||| | || |   |||||||| |||| |||||||||||||||||||| ||
Sbjct: 179 ggaattctgctgtagatgtctttcttcccttgtcgagaacttttagctcacataaatcgg 238

                                                                       
Query: 59  attaatcctgatttttttaatgtttt--------aattg-c-----aa-----aatatt- 98
           | |||||||| |||||||  | ||||        ||||| |     ||     ||| || 
Sbjct: 239 actaatcctgtttttttt--tttttttttttttaaattgacttctgaatgccaaatgttc 296

                                                                       
Query: 99  -t-ttagaatactgtagtagaatatttgaatttatctattg-ttatttgcaaaccccttc 155
            | |||||||||||||||||||||||||||||||| ||||| || |||| |||||  |||
Sbjct: 297 ctattagaatactgtagtagaatatttgaatttatgtattgatt-tttgaaaaccaattc 355

                                                                       
Query: 156 tgttttttgaggtgaaaag-aaagaggtcttgaaattg-cattcatccactctaactccc 213
           ||||| || |||| ||||| ||| || ||||||||||  ||||||| ||||||||||  |
Sbjct: 356 tgtttgttcaggttaaaaggaaaaagctcttgaaatttacattcattcactctaactggc 415

                                     
Query: 214 ctcttatacctggagactcacagtga 239
           || || |||| ||||||| |||||||
Sbjct: 416 ctgttttaccaggagacttacagtga 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 658
Length adjustment: 9
Effective length of query: 247
Effective length of database: 649
Effective search space:   160303
Effective search space used:   160303
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)