BAC Information

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BAC

Clone NameMSMg01-149P22
Chromosome17 (Build37)
Map Location 47,075,938 - 47,076,499
singlet/doubletsinglet
Overlap geneUbr2
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2
Downstream geneLOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149P22.T7 (MSMg01no149_p22.b1)MSMg01-149P22.TJ (MSMg01no149_p22.g1)
ACCAG352556AG352557
length727730
length of high quality
(start - end)
572 (66 - 637)471 (71 - 541)
definitionCHROMAT_FILE: MSMg01no149_p22.b1 PHD_FILE: MSMg01no149_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:26 2005CHROMAT_FILE: MSMg01no149_p22.g1 PHD_FILE: MSMg01no149_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAAACGACTCCTATTTCCAAAAAGCCGCGGAATTCCAGG
ATATTCCCGGATACATAGTGAGATCTGTCTCAAAAAAAAAAAAAGAGAGA
GAGAGACAGACAGACAGATGGCAGGCAGGCAGACAGACAGACAGAGTCTG
CTCCCTCTTCTGTCTGTGGGGACGTACGTCTGGGTGTTTATGCCTCTTTT
CCTTCCCATTTGCAGTTTCTGGAACAAGCCATTTTGAACACTTATGTAAC
TACCTTTCCCTACCAACCAACCTCATTCACCTTTTTCAAGAAAACAGTGA
CATCATGAACTCCCTGATTGAAAGGTAATGTTAGACACTTTTCTGCATTA
TTTAGAATGATTTACAAAATAAAGCTTAGTCTTTCACATTTCAAAAATTT
TCACTTTTGAACTTGATAGACTTCAACACATTTTTCAAGTTATAAGAATT
AGGATGTTTTGCCAAATATGGCAGGCAGCACACTTCTGTAACCCCAGCAC
TCCGGGAGGCAGGAATCTGTGCATTCGCGGCCAGCCTGGTCGACAGAGTG
AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAGTAAT
GCCTAAGTTTTTAAGAGAAAGAATAAGAGTGTCTAGCTAAGGATTTGGCT
TCAGGGTAAGATTGCTGCCAACCCAGCAGTGTGGTCCATGGAGGAAGATA
CACATAAGGAAATGTGTGTCGTCCAGA
ATGATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGTGTAGACCAGGCTGGCCTCGGACTCA
GACATCCTCCTGCCTCTGCCTCTGCTTCTGCCTCCTGAGTTCTGGGTGGG
ACTAAAGTTGTACACCGCCACACCTTGCTCTGCTTTCACATTTAAAACTG
CATGTGTGTTGGTGGTGGCGCATGCCTTTAATCCCAGCATTTGGGAGACA
GAGACAGCCAGGAGCTACACAGAGAAACCCTGTCTTGGAAAAACAAAAAC
AAAAAACAAAAAAAGAAAAATCTAAAAAAAAAAACAAAACAAAAAAAAAC
TGCATGTGTGTCTCTAGAAACGAGTGGGCGGAGCACACTGTGGAGGTAGA
GGATGCCTCTGGACCAGAGCTCATCCCTCCCTCCCGTAAGTAGGTTCAGA
CATCAGTCTCAGGTCCTCAGGCTTACACTGGGGATCAAGAGGCACCTTTA
CCTACTGAGGCATTTCACACCCCTTTTGGACAGGATCTGGGGTAAACTAG
ACTGGCCTGGAATTGGTTATGAAGCTGAGGATGGCCTTGAACGGATCTTT
CTGCCCCCACCTCCCAAGCACTGGGATCACGGGTGTGCGCCTCCGTCCCC
CTGTGCTACATGGCGCTGGTGAACTTACCCAGGGCTTTATGTACACTAGT
TAATCACTCTCCGAGCCACAGTCTCATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_p22.b1 MSMg01no149_p22.b1 CHROMAT_FILE:
MSMg01no149_p22.b1 PHD_FILE: MSMg01no149_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:26 2005
         (572 letters)



>mm_chr17_47075822_47076792
          Length = 971

 Score = 1013 bits (524), Expect = 0.0
 Identities = 557/572 (97%), Gaps = 10/572 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgagatctgtctcaaaaaaaaaaaaagagagagagagacagacagacagatggcagg 60
           ||||||||||||||||   |||||||||||||||||||||  ||||||||||||    ||
Sbjct: 678 tagtgagatctgtctc---aaaaaaaaaagagagagagag--agacagacagat----gg 628

                                                                       
Query: 61  caggcagacagacagacagagtctgctccctcttctgtctgtggggacgtacgtctgggt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 627 caggcagacagacagacagagtctgctccctcttc-gtctgtggggacgtacgtctgggt 569

                                                                       
Query: 121 gtttatgcctcttttccttcccatttgcagtttctggaacaagccattttgaacacttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtttatgcctcttttccttcccatttgcagtttctggaacaagccattttgaacacttat 509

                                                                       
Query: 181 gtaactacctttccctaccaaccaacctcattcacctttttcaagaaaacagtgacatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtaactacctttccctaccaaccaacctcattcacctttttcaagaaaacagtgacatca 449

                                                                       
Query: 241 tgaactccctgattgaaaggtaatgttagacacttttctgcattatttagaatgatttac 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 448 tgaactccctgattgaaaggtaatgttagacatttttctgcattatttagaatgatttag 389

                                                                       
Query: 301 aaaataaagcttagtctttcacatttcaaaaattttcacttttgaacttgatagacttca 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 388 aaaataaagcttagtctttcacatttcaaaatttttcacttttgaacttgatagacttca 329

                                                                       
Query: 361 acacatttttcaagttataagaattaggatgttttgccaaatatggcaggcagcacactt 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 328 acacatttttcaagttataagaattaggatgttttgccaagtatggcaggcagcacactt 269

                                                                       
Query: 421 ctgtaaccccagcactccgggaggcaggaatctgtgcattcgcggccagcctggtcgaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctgtaaccccagcactccgggaggcaggaatctgtgcattcgcggccagcctggtcgaca 209

                                                                       
Query: 481 gagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaagtaatgccta 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 208 gagtgagttccaggacagccaggactacacagagaaaccctgtctcaaaagtaatgccta 149

                                           
Query: 541 agtttttaagagaaagaataagagtgtctagc 572
           ||||||||||||||||||||||||||||||||
Sbjct: 148 agtttttaagagaaagaataagagtgtctagc 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space:   540082
Effective search space used:   540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)