BAC Information

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BAC

Clone NameMSMg01-151A02
Chromosome17 (Build37)
Map Location 54,834,343 - 54,834,745
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151A02.T7 (MSMg01no151_a02.b1)MSMg01-151A02.TJ (MSMg01no151_a02.g1)
ACCAG353290AG353291
length757721
length of high quality
(start - end)
82 (162 - 243)403 (74 - 476)
definitionCHROMAT_FILE: MSMg01no151_a02.b1 PHD_FILE: MSMg01no151_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:42 2005CHROMAT_FILE: MSMg01no151_a02.g1 PHD_FILE: MSMg01no151_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCG
CGGAATTCCCATGATACAACTCATAGACCACATGGAAGCTCAAGAGGAAA
GAAGAACAAAGAGTGGATGCTTCAGTTCTACTTAGATGGGGGAACAAAAT
AATCAAGTGCAGTAGAGGGTAAGAGGTACTTCAGAGGAACAGTGGGGTGG
GGAAGAGGGGAAGAATCCAGTAAAAGAAGAGATGTATAGAGGGTCAGGAC
ATTGAGCAGGATTATGCCCCACTGCAAGATGCGAAACTGGGAGGTAGCAC
CCAGAACGCCCCCAGATGTCAGGAAAGTAAGAGCCTTCCAGGACCCCATC
GGGTGAAATTTGCTGATATACCCCACCAAGGGCAAGGGCAACCTGTTGAG
ACCCTATCCAGAGGTTAACCCCCGCCCCTCTTGCTTGACGGATGCGGCCC
CCCACCTCTCTCCCCTATCTTACCCCCCCACCGCCCCCCTCCGAAGGACC
TCCCGGCCAACCGACCGTCATGGACACTGACGGCCAGGCTATTTTCCGAC
TGCCCCTACCGCCATCCCCTCCCCCTTGTACCCCCCCTCGTCCCGCCCCA
TTGCTTCCTGCCTCCTATGCCGCCTGTCGCCAGGTATCCCTGCCCTCCCC
GCCCTTCTCCCCCCCCTCCCCTCATCCCCTGTCTCCCCTACTCCTTCCCC
CCTCCCCCCTTTCCCCCCCCCCCCCCCCCCCCCCCCGCCTCCCCCCCCCC
GCCCCCC
CGATGAAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCATGTTAGTGGCCTGTCTTCAGCCC
CTAGGGTTCTCAACTGTGAGCCACTCTTCAGCTTTTCCAAGAGGGTGCAT
GATTCTCTGGGCAGCTCATGAGTTTACTTTTCATGTAAACTGAATGAAGG
ATTGTTATTTCACTTATTAAAATTTTATTTTGAAATGAATATAGATTTAC
TGTTACCTGCAAAATCTTATAAAATCTTCACTCAGCTTTCTTGTAAATGG
CACCAAGCACAGTTGCTATGGTGGCACACTGTCCTACCAGTACTGTTTAG
CACAGTGAAACATGGTTACTTTAACCAGTGTCTTCTGTTGTTGAACCATT
TGGAGATTCGCAGTTACCAGCTGCTTCCGATGAAAACTGTCCATGTACCA
AACTTTGGAGAATTAAGGAAGTTTGGCAGATGTAGATTGATATTGGGAAG
GAATTTTAATTTGTAAGATTTGTAAGTCCAGGTCTTCCCACTGAGGTCAG
CTTGGATGCCGTCAATCATAAACATTCACTGCTGTGTGAACTCCTGCTGA
CCTCTGAACAATCCTCACAGTCAATCATGTACCTCTAAGAAGCCAGTACA
GAACTTTTAGCGGCACTCAGACTCTCTTGGACCCAGCCTTATTGCTCCAG
TTGTACCATTTCTAGATTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_a02.g1 MSMg01no151_a02.g1 CHROMAT_FILE:
MSMg01no151_a02.g1 PHD_FILE: MSMg01no151_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:42 2005
         (403 letters)



>mm_chr17_54834143_54834945
          Length = 803

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatgttagtggcctgtcttcagcccctagggttctcaactgtgagccactcttcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tccatgttagtggcctgtcttcagcccctagggttctcaactgtgagccactcttcagct 544

                                                                       
Query: 61  tttccaagagggtgcatgattctctgggcagctcatgagtttacttttcatgtaaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tttccaagagggtgcatgattctctgggcagctcatgagtttacttttcatgtaaactga 484

                                                                       
Query: 121 atgaaggattgttatttcacttattaaaattttattttgaaatgaatatagatttactgt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgaagaattgttatttcacttattaaaattttattttgaaatgaatatagatttactgt 424

                                                                       
Query: 181 tacctgcaaaatcttataaaatcttcactcagctttcttgtaaatggcaccaagcacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tacctgcaaaatcttataaaatcttcactcagctttcttgtaaatggcaccaagcacagt 364

                                                                       
Query: 241 tgctatggtggcacactgtcctaccagtactgtttagcacagtgaaacatggttacttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgctatggtggcacactgtcctaccagtactgtttagcacagtgaaacatggttacttta 304

                                                                       
Query: 301 accagtgtcttctgttgttgaaccatttggagattcgcagttaccagctgcttccgatga 360
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 303 accagtgtcttctgttgttgaaccattaggagattcacagttaccagctgcttccgatga 244

                                                      
Query: 361 aaactgtccatgtaccaaactttggagaattaaggaagtttgg 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaactgtccatgtaccaaactttggagaattaaggaagtttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)