BAC Information

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BAC

Clone NameMSMg01-151A17
Chromosome17 (Build37)
Map Location 72,523,618 - 72,523,794
singlet/doubletsinglet
Overlap geneAlk
Upstream geneLpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4
Downstream geneYpel5, Lbh, Lycat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151A17.T7 (MSMg01no151_a17.b1)MSMg01-151A17.TJ (MSMg01no151_a17.g1)
ACCAG353316AG353317
length765730
length of high quality
(start - end)
177 (72 - 248)---
definitionCHROMAT_FILE: MSMg01no151_a17.b1 PHD_FILE: MSMg01no151_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:45 2005CHROMAT_FILE: MSMg01no151_a17.g1 PHD_FILE: MSMg01no151_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGCATCCGCGGAAT
TCCTTGGGTTTTATTAACAAGAACCAGTGTACCAGCCTCCTGATTCATGT
CATTTAGTTCCTTCATCATCAAAATGGGAATAATAACTAGTATATATCTA
TCTCCTAAAATTAGTTCAATTATAAAATGGTAAGTGAAGAATGTAGTCAG
AAAAACGTGAATGTACTCACTTGAGAAATGTCTTGGGCCATTACTAAGTA
ACAGGCCAGGTAGGTTACACACCTGAACACACAATTCTCTGGCGCTCCTA
CTTTGATTCCACCTGATTGTTTTTCTGTTGCTCACCATGACCACACACCT
GCCTCTCATTGTTTTGGTTCCTGAAGGCCAGCCATCTGCGCAGCTCTGGA
TAAACTCACCACCCCCTGATCCAATTCATACAACTGTGTCCTAGTTTTGA
TGCCTGCCTTTCTCTGCTCACTTTCCACCTCCGATCCTGCCTGACCGCTT
TTTTCCTCCCTTCTACCCCCTTTCTCCCCATGCTGCTTTCCATTTACCTT
TCCCCCTGTTCTCTTTTTGTCCCCTTTTTATTTTTCTTCCCCCCACCTTT
CCCCCCATTGTCTCTTTTTCCCCTTCTTCTCTTCCCGTTACCTCTCCCCA
TGCTCCTTATTCCTATGCTTTTCCCCCCTTTTTCCCCCTTTTATCCCCCA
CCTTTTTCCCCCTTTTTTCTTTCCCCTTTTTTTCCCCCCCCTCCTTTTCC
CCCTTCTCCCCTTTT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTGCAACACGGAAAGGCGGTGGTAGAAT
CCTGGACTTCTGTGGTTCTTCACAGCAGCCTCCTTTGCTCCAGGAGCATC
GTTAGTCAGCCAGGTTTAGAGCGCAGCACAGCCCAAGACGCTCATGCAAC
GGGTAGGTGGGGCCTGCTATATGCCCAGGACACCAGGTGGCCTCTGAAGT
CTGGGTGAGGCTGAACCGATATTCTATCTCGGATGAATGCTTTAGCTTCT
TGCTCTCTGCGACCATGATTTAGCTGCATCTTGGGACAGGACACCTGGCA
CAGAGCATCTGCTCCTGTCAGCTGCTGTAACCGTCATGATGATGGCTTCC
AGGATCCACCCACGATACAGGGAAAACACCAGAAGTGCCAGACGGAATGA
GGTCGTGAGCACGAGGATCTCTGCTAAGACTTTTGTCAAGAGCTGCCGGA
AAGATTGCACTAATGCTCTGAATTAAGCCTTCCTTCCTAGCCGTCGACTT
CTGGTTTCTCGCAACACGCGTGGGCGTCCTCCAGTGGAGAGCTGCCCCTC
TGACAGCCTGGTGGAGCACCTTTTCCGACATGCCTGATAAGGCCAACGGG
CCTCTTGTTCCTGACTTTGGCCCCCACGCCTGCCTCTCCTGCCCCTCACC
CCCGCTTCCCCCTTCACTGTTGACCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_a17.b1 MSMg01no151_a17.b1 CHROMAT_FILE:
MSMg01no151_a17.b1 PHD_FILE: MSMg01no151_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:45 2005
         (177 letters)



>mm_chr17_72523418_72523994
          Length = 577

 Score =  342 bits (177), Expect = 6e-99
 Identities = 177/177 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccagtgtaccagcctcctgattcatgtcatttagttccttcatcatcaaaatgggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaccagtgtaccagcctcctgattcatgtcatttagttccttcatcatcaaaatgggaat 318

                                                                       
Query: 61  aataactagtatatatctatctcctaaaattagttcaattataaaatggtaagtgaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aataactagtatatatctatctcctaaaattagttcaattataaaatggtaagtgaagaa 258

                                                                    
Query: 121 tgtagtcagaaaaacgtgaatgtactcacttgagaaatgtcttgggccattactaag 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtagtcagaaaaacgtgaatgtactcacttgagaaatgtcttgggccattactaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)