BAC Information

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BAC

Clone NameMSMg01-151L17
Chromosome17 (Build37)
Map Location 20,359,852 - 20,360,505
singlet/doubletsinglet
Overlap geneEG627743
Upstream geneLOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6
Downstream geneEG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151L17.T7 (MSMg01no151_l17.b1)MSMg01-151L17.TJ (MSMg01no151_l17.g1)
ACCAG353813AG353814
length732734
length of high quality
(start - end)		561 (46 - 606)654 (73 - 726)
definitionCHROMAT_FILE: MSMg01no151_l17.b1 PHD_FILE: MSMg01no151_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:37 2005CHROMAT_FILE: MSMg01no151_l17.g1 PHD_FILE: MSMg01no151_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAACTCTTCCCCTGGGTAACGGTGATAATGAAGTGTTCCTGCAA
AACAGACTGCTGAGAAGGATCCCACTGCATGGATTCAGAACTCTTCAGCT
GAGGAACGGTGGTACCAGTAAGTCTCCCAAATTGATCCCCAGGTTAAAGG
GGGATATGTTTTTTAAGAAAAAGAAAAGGGAGAAAAAATAAAAGGAATCA
GTGATAAAGAAAAGGAAATAGTCAAGGGAAGGAAAAGGGAAAGGAAAGGA
AAAAAAAGGAAAGAGAAAAGGAAAAGAGAGAAGAGAAGGAAAGAAAGGAT
TGAGACGATAAGGTTCCCGGCTTTGGGACAAGTTAAGGTTCATGAGTTAT
GCTTTTTTCTCCCATTGACCCCCCGCGGGTAGGTCTGATAGTTTTGGTCT
TGTTTGTTCTGATATATGGACTCTGTTACTGTTTGAAACTGTGTGTAGAG
GCAGTCAAGACAGGTCAGAAAATCCTTACAGAGCAACAAGAAAGTATGTC
GGAAGAGGAGAAGGGCTTAAAAAGAAAAAGGAAAAAGAAAGGAGACACAG
TGTTATCAGGTGGACCAGAAGAAGAAAGTGTACAGCAAGCTTATGGCTTG
CTTAATGGAACTTTATAAAATAATGGCTTGATTATTGCACCATAAAAAGT
ACAGCAGTCTAATGTTAGTCATTTTTTAGGAG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTAGTACTCCAGGGTCATCTCTTCCT
AGCTTCTTCCATCATGAAAGAAATTGGATAATATTCTAAAATTATAAGCA
TATACCCAGTTAATAATTTTTATAAGCTTGGTTTATGCTATCTTTTCATA
GCAAAAGAAGAGTAACTAAGACAGGATAATTACACAATTCCCTAAATGCT
TTAGAAAGCTTTACTTACAAATAGTATCTGCTGATACTATTCAAGACATG
ATAGATATTGTCATTATCACTGAAATTTAGATATCTTTTTCTATTTTATG
TAGCTGTATATTTATGCAAAATTTGATTTTTAAATAAAATAGTTCTGCTT
GTCTCACAACTCAAAACGCCACAGAAAACATGCTGGTGTTTGTGGAGGGA
GCTTTCTAGACTTTCAGAGCACAGTAAGTGTATATGAAAAGAGCACACAT
TCTAGCAATTTTCCTACAACTCTTGTGATTAATGATCAGCTTCTAATATT
ACTGTATAAATGGATGAGTTTGCAATCATGAGCTAATACTCTGCTATGAG
ACACACATTTTAATTGTTTTTTATTTTAGAAATAAGTATCTAGCACATGA
ATTATAGTTATAAAATGACCCACAGGTACATACACATATGACATGTGTGT
CTATAGGTAGGTAGGTAGGTAGGTAGATAGGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_l17.g1 MSMg01no151_l17.g1 CHROMAT_FILE:
MSMg01no151_l17.g1 PHD_FILE: MSMg01no151_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:37 2005
         (654 letters)



>mm_chr17_20359524_20360577
          Length = 1054

 Score = 1218 bits (630), Expect = 0.0
 Identities = 648/654 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttagtactccagggtcatctcttcctagcttcttccatcatgaaagaaattggataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ctttagtactccagggtcatctcttcctagcttcttccatcatgaaagaaattggataat 923

                                                                       
Query: 61  attctaaaattataagcatatacccagttaataatttttataagcttggtttatgctatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 attctaaaattataagcatatacccagttaataatttttataagcttggtttatgctatc 863

                                                                       
Query: 121 ttttcatagcaaaagaagagtaactaagacaggataattacacaattccctaaatgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ttttcatagcaaaagaagagtaactaagacaggataattacacaattccctaaatgcttt 803

                                                                       
Query: 181 agaaagctttacttacaaatagtatctgctgatactattcaagacatgatagatattgtc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 802 agaaagctttacttacaaatagtatctgctgatactattcaagacatgatagttattgtc 743

                                                                       
Query: 241 attatcactgaaatttagatatctttttctattttatgtagctgtatatttatgcaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 attatcactgaaatttagatatctttttctattttatgtagctgtatatttatgcaaaat 683

                                                                       
Query: 301 ttgatttttaaataaaatagttctgcttgtctcacaactcaaaacgccacagaaaacatg 360
           |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct: 682 ttgatttttaaataaaatagttctgcttgtctcacaactcaaaatgtcagagaaaacatg 623

                                                                       
Query: 361 ctggtgtttgtggagggagctttctagactttcagagcacagtaagtgtatatgaaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctggtgtttgtggagggagctttctagactttcagagcacagtaagtgtatatgaaaaga 563

                                                                       
Query: 421 gcacacattctagcaattttcctacaactcttgtgattaatgatcagcttctaatattac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 562 gcacacattctagcaattttcctacaactcttgtgattaatgatcagcttccaatattac 503

                                                                       
Query: 481 tgtataaatggatgagtttgcaatcatgagctaatactctgctatgagacacacatttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgtataaatggatgagtttgcaatcatgagctaatactctgctatgagacacacatttta 443

                                                                       
Query: 541 attgttttttattttagaaataagtatctagcacatgaattatagttataaaatgaccca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attgttttttattttagaaataagtatctagcacatgaattatagttataaaatgaccca 383

                                                                 
Query: 601 caggtacatacacatatgacatgtgtgtctataggtaggtaggtaggtaggtag 654
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 382 caggtacatacacatatgacatgtgtgtctataggtaggaaggtaggtaggtag 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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