BAC Information

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BAC

Clone NameMSMg01-152G09
Chromosome17 (Build37)
Map Location 56,899,486 - 56,899,879
singlet/doubletsinglet
Overlap genenone
Upstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn
Downstream geneDus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152G09.T7 (MSMg01no152_g09.b1)MSMg01-152G09.TJ (MSMg01no152_g09.g1)
ACCAG354287AG354288
length725754
length of high quality
(start - end)
394 (74 - 467)356 (77 - 432)
definitionCHROMAT_FILE: MSMg01no152_g09.b1 PHD_FILE: MSMg01no152_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:29 2005CHROMAT_FILE: MSMg01no152_g09.g1 PHD_FILE: MSMg01no152_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCACAACCGCGGAA
TTCCAGCACATTTCCCTCGACGGCTCTGGACTCAGGCTGCCACCATCTCT
AACAGGGCCCGGCATTCTGGTTGAAATGGATCAAAGAAAGGGACTGCATG
TGTCTGTGCATCTTTGAGCCTCAGTTTCCCAATGCTAGGCTCTGATGGGA
CACTAGATGCTACCCCACATTTGTTCCCATGCTGTGGGAGGTTCAAATGT
TGTTGAAACTGGTCTCTAGTCCTACATAGCCTGCATCCGGGACAAGAGTC
TAAACATAAAATACTGTAAACACTGAAGCCCAGCAGCCCTGGGGTCAGCT
GCCTAGATGGCTGTGACCCTTCTCCAAGGGAGGTGACATCAACTGGCTGG
TCTCCATGAAGCATGTCCCTCACCCAACAAGATCCCAGATCCCAGTTGGG
GATCAGCCTCATCTTAGCTGGTGTAAGAATGAAGAATTCTGGAAGAATTC
TGATTCTCTCTGTCTCTGTCTGACTCTGTCTGTCTGTCTGTCTGTCTCTG
TCTCTGTCTCTCCGTGTCTCTGTGCCTGTCTCTCTCTCTGTCTCTCTCTG
TCTCTGTCTCTGTCTCTCTCTCCGAGACTCCTCCTCTCTCCGCCCCAGTT
CCCAGCTGAGGTGTGACCTCACCAGCACGAACGGGCGTCCGCCAGTTGCT
GACTGTCTCCGGGGTGGCAAAATGC
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACACTCCCTATGTAGTCAAAGATGACCCTG
AAATCCTTCATTCTCTTGCCTGCACTGAGTGCTGAGATGACAGACCTACA
AACACCATGCCTGATTTATGGGGCGCTGACGACAGGACCCAGAGCTTTAT
GCATGCTAGGAAAGATCTTTACCACTGATCTACAACCCCAACCCCTTAGG
GTTTTTTTAAGCATTTTGTTTTTCCTATTTTTGAGAAAGGATGTCCCTGT
GTAGTCCTGGCTATAGATCAAGCTGGCCTTGAACCTACAATTTTCCTGCC
TCGGCCTCCCAAATACTAAAGTCACAATCATGGGCCACCATACCCAGTCC
TTTCTACTTAGTTCCATAGGTAATATACAGGCACACAAACCGGCAAACAT
GGAGGAGTAGAAAGGGTCAATGAGGTAACCAGGGCTGGGAGAGAGGCTGG
GGTGCCCAGGCATCCCCCCCAGCACGGGTATACGGGCCTACCCGAGTTCC
AGGAATCACGGAAGCTTGTAAATTTACCCTTTGCAGGCGTTGGGAGCTCC
TAAGACCCCCCCACCCCCGCTTTGACCCGTCCAACAATGATTAAGGCCCC
GCCCCCTAAACCTCGCAAACTCACAAATTTCCCCCCCTCCCCGCCGTTCG
TATCCACGTTCCCACCGGATTCCCTTTCCACCTTCACTTTGGCAAAACCA
TTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_g09.b1 MSMg01no152_g09.b1 CHROMAT_FILE:
MSMg01no152_g09.b1 PHD_FILE: MSMg01no152_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:29 2005
         (394 letters)



>mm_chr17_56899286_56900079
          Length = 794

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctggactcaggctgccaccatctctaacagggcccggcattctggttgaaatggatca 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctctgaactcaggctgccaccatctctaacagggcccggcattctggttgaaatggatca 535

                                                                       
Query: 61  aagaaagggactgcatgtgtctgtgcatctttgagcctcagtttcccaatgctaggctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aagaaagggactgcatgtgtctgtgcatctttgagcctcagtttcccaatgctaggctct 475

                                                                       
Query: 121 gatgggacactagatgctaccccacatttgttcccatgctgtgggaggttcaaatgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gatgggacactagatgctaccccacatttgttcccatgctgtgggaggttcaaatgttgt 415

                                                                       
Query: 181 tgaaactggtctctagtcctacatagcctgcatccgggacaagagtctaaacataaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgaaactggtctctagtcctacatagcctgcatccgggacaagagtctaaacataaaata 355

                                                                       
Query: 241 ctgtaaacactgaagcccagcagccctggggtcagctgcctagatggctgtgacccttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctgtaaacactgaagcccagcagccctggggtcagctgcctagatggctgtgacccttct 295

                                                                       
Query: 301 ccaagggaggtgacatcaactggctggtctccatgaagcatgtccctcacccaacaagat 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 294 ccaagggaggtgacatcaactggctggtctccatgaagcatatccctcacccaacaagat 235

                                             
Query: 361 cccagatcccagttggggatcagcctcatcttag 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 cccagatcccagttggggatcagcctcatcttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)