Query= MSMg01no152_l10.b1 MSMg01no152_l10.b1 CHROMAT_FILE:
MSMg01no152_l10.b1 PHD_FILE: MSMg01no152_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:53 2005
(274 letters)
>mm_chr17_36909920_36910593
Length = 674
Score = 470 bits (243), Expect = e-137
Identities = 264/271 (97%)
Strand = Plus / Minus
Query: 4 gaattcgcctgtcttcccgtgacaattccgcaacgcttgctgtctcactggcccaatatg 63
||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 474 gaattcgtctgtctagctgtgacaattccgcaacgcttgctgtctcactggtccaatatg 415
Query: 64 tcattggcacctgctccatccatgcaacccgaggtagcaaaactgcaattggttctttgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcattggcacctgctccatccatgcaacccgaggtagcaaaactgcaattggttctttgc 355
Query: 124 tgtcatatctctgatactctatagagtctacatagccaatgtggatgaaccgggaattaa 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 354 tgtcatatctctgatactctatagagtctacatagccaatgtggacgaaccgggaattaa 295
Query: 184 ccatgccaggctccaaaatcacagcgttgaaagtctgcagccagtgtgagcctgtgggtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccatgccaggctccaaaatcacagcgttgaaagtctgcagccagtgtgagcctgtgggtg 235
Query: 244 atgcacattgaaatgctgactctttatcgtg 274
|||||||||||||||||||||||||| ||||
Sbjct: 234 atgcacattgaaatgctgactctttagcgtg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no152_l10.g1 MSMg01no152_l10.g1 CHROMAT_FILE:
MSMg01no152_l10.g1 PHD_FILE: MSMg01no152_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:53 2005
(440 letters)
>mm_chr17_36791643_36792482
Length = 840
Score = 714 bits (369), Expect = 0.0
Identities = 412/427 (96%), Gaps = 5/427 (1%)
Strand = Plus / Plus
Query: 3 ttagctcttgcacagctgcacacagccatctaacttcaaatacacatgatctgaaaacat 62
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ttagctcttgcacagctacacacagccatctaactccaaatacacatgatctgaaaacat 263
Query: 63 tttgtgatatccacaacaaccaggcaaaacatggaacatagatatacatgcaaaaaaaac 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 tttgtgatatccacaacaaccaggcaaaacatggaacatagatatacatgcaaaaaaa-c 322
Query: 123 atgtcttacacatgaaaaaactgaaaaatatattaattaaatggtgagaaacggaaggga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgtcttacacatgaaaaaactgaaaaatatattaattaaatggtgagaaacggaaggga 382
Query: 183 gctagagatacaaatgtcaaaacacccacagcaagacagattatagaaaaagctctgccc 242
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 gctagagatacaaatgttaaaacacccacagcaagacagattatggaaaaagctctgccc 442
Query: 243 tcaaaactcaattagatcagtggtcagaaaatccaattttcaaataccctgctgaacttg 302
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcaaaactcaaccagatcagtggtcagaaaatccaattttcaaataccctgctgaacttg 502
Query: 303 tgcattgttatgtacctaatgaaactcaccatcccagctcagcctgtagtggcagagcat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgcattgttatgtacctaatgaaactcaccatcccagctcagcctgtagtggcagagcat 562
Query: 363 gtccatgatctctattgtttcctacaatctatatgtcttacacata-c-catgccactga 420
||||| ||||||| |||||||||||||||||||| |||||||||| | || |||||||
Sbjct: 563 atccataatctctactgtttcctacaatctatatgccttacacatatcaca--ccactga 620
Query: 421 ttattaa 427
|||||||
Sbjct: 621 ttattaa 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
