BAC Information

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BAC

Clone NameMSMg01-152M09
Chromosome17 (Build37)17 (Build37)
Map Location 35,354,617 - 35,355,01235,685,434 - 35,685,779
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneH2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta
Downstream geneNfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M09.T7 (MSMg01no152_m09.b1)MSMg01-152M09.TJ (MSMg01no152_m09.g1)
ACCAG354559AG354560
length709706
length of high quality
(start - end)
397 (47 - 443)346 (76 - 421)
definitionCHROMAT_FILE: MSMg01no152_m09.b1 PHD_FILE: MSMg01no152_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:58 2005CHROMAT_FILE: MSMg01no152_m09.g1 PHD_FILE: MSMg01no152_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:58 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,354,617 - 35,355,012)(35,685,434 - 35,685,779)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTAAGGACTAAGGGCAGTTTTTACCTGGAGAGACGGGATGGAGA
CGGTTTATTAAGTTTTCTGGTTGGTTTTGTGAAGAGGGCTCCCAGCTTCT
ATGACCCAGATAGGCAAGCATTGTAGCCTGTGAGCGGCTCTGGGGCAGGG
AGAAGAGCCGAGGTGAAGCCTGGGAGAATGGCAGGAGCAGCTCCTGGGTC
TCTTAAGTTAGTTGCAAGCCCTTGGCGGGCCACTATGTCCTGTCTCAGAA
CCCCCAGCAAGATCACAGTGACTGAAAAGGCTGAGCTCATGTGGTAGAGC
CAGGCTGGGCCCCGCAGGACACTCCCATTCTTGATCCTCACAGGTGCCCC
AGGTCGCCATTACAGTAAAACCCCCAATTCTCCGATCCCAGCCTTGCTTG
CACAGGCTCTCACACACCTGTGCTTCTCTGCCTGGAGACGCTCAGTTGTG
TACCAGCACATTCCAGCTCACGCCATGTTTTGTGACTTCTCAGCCTCGGC
CCAAGCTCTTTGGTCAGCCTTAGGGATTTTCACTGTCCCCGGCCTCCTGG
GAGCCTCCTGCCTGGATCCATGCGCCCTACTGTGAAGGCAGCCATTCATG
CCTTCCCTCACTGGGCTATAGGTATGTTCCCCACAGCAGAGATCGAATCC
CTTGGTTCC
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAGAAGGGGGTCTTTGTAGGCACCG
GCTTAGGCTGGGGAGAAGGAAGTGAATGACAAAGAGGAAAGACTGAGAGG
AGTCTTCCTGTGTAAAGACAGCTGGAGAGAGGTTGTCCTTAGCTCCTCCC
TCCTCTCCCTGAGTCCTCAAGAAGAAGGTGACAGTCCTGGCCCCCTCCCA
CTGGGCATGTCCTCAGAGCTGTTTTTCCTGTAGTGGGGATTGGCGGCCCT
GACCAAGAGCACTGAGGGACAGGATTTGTCTGTGTGTTCAGTCCCTACCA
GACTAGGCCCCCTGTGACAGAAATCTCTCTCAGCTCCACTCATCCCTGGG
AGCACTCTGCTGGCATCTTGGGAGCACTCTACTAGCATCCCTGGGAGCAC
TCTGCTGGCATCTCTGGGAACACTCTGCTGATATCTACAGTTTCTACCTT
ACAGAAGACAACCAGCTTTCTTCACTCTCTCCTCACACAGCCTCTGCAAC
CTGTCTGGCTCCCAAACACAAAGAACATTTCCGTAGGACCTCAGACTCTG
GGACCGCGAGCGACATATGTGTGCACCTGAATTGCTAGCACCCATCCTTG
GGAGGCCCATGGCGACGCGGGGTGCGTGCATTACCCACCTGTCCCTGCGA
GCGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m09.b1 MSMg01no152_m09.b1 CHROMAT_FILE:
MSMg01no152_m09.b1 PHD_FILE: MSMg01no152_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:58 2005
         (397 letters)



>mm_chr17_35354416_35355212
          Length = 797

 Score =  688 bits (356), Expect = 0.0
 Identities = 386/396 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcatttaaggactaagggcagtttttacctggagagacgggatggagacggttta 61
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 202 ggaattcatctaaggactaagggcagtttttacatggagagacgggatggagacggttta 261

                                                                       
Query: 62  ttaagttttctggttggttttgtgaagagggctcccagcttctatgacccagataggcaa 121
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaagttttctggttggttttgcgaagagggctcccagcttctatgacccagataggcaa 321

                                                                       
Query: 122 gcattgtagcctgtgagcggctctggggcagggagaagagccgaggtgaagcctgggaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 322 gcattgtagcctgtgagcggctctggggcagggagaagagccgaggtaaagcctgggaga 381

                                                                       
Query: 182 atggcaggagcagctcctgggtctcttaagttagttgcaagcccttggcgggccactatg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 382 atggcaggagcagctcctgggtctcttaagttagttgcaagcccttggccggccactgtg 441

                                                                       
Query: 242 tcctgtctcagaacccccagcaagatcacagtgactgaaaaggctgagctcatgtggtag 301
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 442 tcctgtctcggaacccccagcaagatcacagtgactgaaaaggctgagctcatgttgtag 501

                                                                       
Query: 302 agccaggctgggccccgcaggacactcccattcttgatcctcacaggtgccccaggtcgc 361
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agccaggctgggccccacaggacactcccattcttgatcctcacaggtgccccaggtcgc 561

                                               
Query: 362 cattacagtaaaacccccaattctccgatcccagcc 397
           |||||||||||||| |||||||||||||||||||||
Sbjct: 562 cattacagtaaaactcccaattctccgatcccagcc 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no152_m09.g1 MSMg01no152_m09.g1 CHROMAT_FILE:
MSMg01no152_m09.g1 PHD_FILE: MSMg01no152_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:58 2005
         (346 letters)



>mm_chr17_35685234_35685979
          Length = 746

 Score =  669 bits (346), Expect = 0.0
 Identities = 346/346 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagggggtctttgtaggcaccggcttaggctggggagaaggaagtgaatgacaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cagaagggggtctttgtaggcaccggcttaggctggggagaaggaagtgaatgacaaaga 487

                                                                       
Query: 61  ggaaagactgagaggagtcttcctgtgtaaagacagctggagagaggttgtccttagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggaaagactgagaggagtcttcctgtgtaaagacagctggagagaggttgtccttagctc 427

                                                                       
Query: 121 ctccctcctctccctgagtcctcaagaagaaggtgacagtcctggccccctcccactggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctccctcctctccctgagtcctcaagaagaaggtgacagtcctggccccctcccactggg 367

                                                                       
Query: 181 catgtcctcagagctgtttttcctgtagtggggattggcggccctgaccaagagcactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 catgtcctcagagctgtttttcctgtagtggggattggcggccctgaccaagagcactga 307

                                                                       
Query: 241 gggacaggatttgtctgtgtgttcagtccctaccagactaggccccctgtgacagaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gggacaggatttgtctgtgtgttcagtccctaccagactaggccccctgtgacagaaatc 247

                                                         
Query: 301 tctctcagctccactcatccctgggagcactctgctggcatcttgg 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctctcagctccactcatccctgggagcactctgctggcatcttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)