BAC Information

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BAC

Clone NameMSMg01-153H24
Chromosome17 (Build37)
Map Location 65,061,791 - 65,062,366
singlet/doubletsinglet
Overlap geneMan2a1
Upstream geneLOC668677, A930002H24Rik, Fert2, LOC669778, Pja2, LOC100043582
Downstream gene4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153H24.T7 (MSMg01no153_h24.b1)MSMg01-153H24.TJ (MSMg01no153_h24.g1)
ACCAG355082AG355083
length731768
length of high quality
(start - end)
596 (68 - 663)102 (75 - 176)
definitionCHROMAT_FILE: MSMg01no153_h24.b1 PHD_FILE: MSMg01no153_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:53 2005CHROMAT_FILE: MSMg01no153_h24.g1 PHD_FILE: MSMg01no153_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCCTGGTGCTTTGGATTGACCGATCTGGGCTGATGGAGGTATGTTCTG
ATTCGTTGTGACAGCCATAAATCTCACTGCGTTTACTCTGTGTCCATGAC
AGTGCAGAGGGGGAAGGCCCTCTTAGGTAGGGAGGCAGCAGAGCTCTGGG
AGACAGGGCTGATCTGCTTCTGCCTACTTCTGTGGTCACCTGCTGTCGCA
GCATGGCGCCCAGCCATGCTGCTTGCCCGTTAGCTAAGTGTGGTGGATGA
AAGTGTTTACCGAAGCTGTGGAAGCAGTTCAGCAGAATAAAAGACCTGTC
GGCTATCATGCAAAGTGAGGTGGTTTTTTTACATTTTAATTCCGATTTTT
AGTTCACTTTTACCGCGTTTTAAAAACAAATTGACCCATGCCTATTGGCA
ATTACACTATGTCTCCTTCTGCAGAAGATTTGAGCAGAGGTCTAAGTTCT
TTATTCCTTGCTAAAGTATAGGGCAGTGCTTTGTTCCAACTTCAAGGCTT
TAAAATCTGAGGTCAACTATGAAATGTTGATGCTAACCAAATATTTCTCA
CCTGACGGGCTTACTTCAGCATTTTTAGTCTCACTCCGCATTTTCTTTTC
TGAGATAGGATGAGACTATGTAGCCCAGGCTTGCCTTGAACTCCTTATTA
CGCCTAGGCTACCCTTACACTTAGCCCTTCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAAGTTCTCTTGACTTTCACAGAT
AGGTTCTGATCCTGTGTGGCCACAAAATAATGGTGAGGGTTCCCCCACCC
ACCCACCCACCCATCCACCATGCACAGGAGACATTCAGACCCACTCACTG
GGCTCTTGAAATGAGGACAGTCTCGAACCTGCCACCTCCGTGCAATCAGC
TTTGCTCCATATAATTCCCTTCCCCGCGCCTCTAACTCCCTTATCATCCA
TCTTATGGTGCACAGTTGATGCTTTCCCATAACGCACCACGGCAGCCTGC
CCCCGTATCTGTATGCCACCCTATCGTGTCTCCTGCCACAAAGCGCTGCC
TAAAAGCTTCCGCCTCCCCCCCTTTAACCTGAACCTGTTGTCCACCCATG
CTTACATGCTTCCCCGCCTGCTCCCGCCTGCTGATCTTCTTGCCGGCTTA
CCCACTTATATTCCCCAGACCCAGTCTCATTTCCCCACTCCCCACCAATT
CGCCTCTCCTGTTACCCTACTTTCATTTATTTCCTTTCTACCATTTACTC
GCCCTATTTTCTCCTCCTATCGCTTCTTTATTTCTCCCCCGTCCACTTCC
ATTCCTTCCCCCTCCTTGACCTCCTTTCCCTTTAATCCGACCCTTACACC
TTCTTTCTTTTATCCTGCCCCCACCGTCCTCGTCCCTTCCCCCTCCCCCC
TATCTTTTACTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_h24.b1 MSMg01no153_h24.b1 CHROMAT_FILE:
MSMg01no153_h24.b1 PHD_FILE: MSMg01no153_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:53 2005
         (596 letters)



>mm_chr17_65061591_65062586
          Length = 996

 Score = 1048 bits (542), Expect = 0.0
 Identities = 573/596 (96%), Gaps = 20/596 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaccgatctgggctgatggaggtatgttctgattcgttgtgacagccataaatctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaccgatctgggctgatggaggtatgttctgattcgttgtgacagccataaatctcac 260

                                                                       
Query: 61  tgcgtttactctgtgtccatgacagtgcagagggggaaggccctcttaggtagggaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcgtttactctgtgtccatgacagtgcagagggggaaggccctcttaggtagggaggca 320

                                                                       
Query: 121 gcagagctctgggagacagggctgatctgcttctgcctacttctgtggtcacctgctgtc 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gcagagctctgggagacagggctgatctgctcctgcctacttctgtggtcacctgctgtc 380

                                                                       
Query: 181 gcagcatggcgcccagccatgctgcttgcccgttagctaagtgtggtggatgaaagtgtt 240
           |||||||||||||||||                    |||||||||||||||||||||||
Sbjct: 381 gcagcatggcgcccagc--------------------taagtgtggtggatgaaagtgtt 420

                                                                       
Query: 241 taccgaagctgtggaagcagttcagcagaataaaagacctgtcggctatcatgcaaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taccgaagctgtggaagcagttcagcagaataaaagacctgtcggctatcatgcaaagtg 480

                                                                       
Query: 301 aggtggtttttttacattttaattccgatttttagttcacttttaccgcgttttaaaaac 360
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 481 aggtggtttttttacattttaattccgatttttagttcacttttactgtgttttaaaaac 540

                                                                       
Query: 361 aaattgacccatgcctattggcaattacactatgtctccttctgcagaagatttgagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaattgacccatgcctattggcaattacactatgtctccttctgcagaagatttgagcag 600

                                                                       
Query: 421 aggtctaagttctttattccttgctaaagtatagggcagtgctttgttccaacttcaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aggtctaagttctttattccttgctaaagtatagggcagtgctttgttccaacttcaagg 660

                                                                       
Query: 481 ctttaaaatctgaggtcaactatgaaatgttgatgctaaccaaatatttctcacctgacg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctttaaaatctgaggtcaactatgaaatgttgatgctaaccaaatatttctcacctgacg 720

                                                                   
Query: 541 ggcttacttcagcatttttagtctcactccgcattttcttttctgagataggatga 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggcttacttcagcatttttagtctcactccgcattttcttttctgagataggatga 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)