BAC Information

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BAC

Clone NameMSMg01-153P19
Chromosome17 (Build37)
Map Location 34,513,827 - 34,514,456
singlet/doubletsinglet
Overlap geneLOC100038862
Upstream geneZfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2
Downstream geneLOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153P19.T7 (MSMg01no153_p19.b1)MSMg01-153P19.TJ (MSMg01no153_p19.g1)
ACCAG355406AG355407
length735734
length of high quality
(start - end)
603 (41 - 643)635 (70 - 704)
definitionCHROMAT_FILE: MSMg01no153_p19.b1 PHD_FILE: MSMg01no153_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:29 2005CHROMAT_FILE: MSMg01no153_p19.g1 PHD_FILE: MSMg01no153_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACGCGTCTCCACCGTTCGCTGACGAAGGGCTTCTCCACCTGGATTTCCT
CTGCATTTTCCTACTTTAAGGAGTGGGTGGAGGTAGGCTTGTTTGCCGTG
ATCCTATGTGGTGGAGCGTTGCTTTTGCTCTGGATGGTCTGTAAACTTAA
AGCCCAAACAAAAAGGGACAAGATGGTGATAGCCCAAGCACTTGCAGCAT
TAAAACATGGTGCCTCCCCTGATATATGGTTATCTGTGCTTAAGCAATAG
GTCACTGGCCGCTCAGCTCTTGCACCCCACGAGGCTAGTCTCATTGCACG
AGATAGAGTGAGTGTGCTTCAGCAGCCTGAGAGAGTTACACTGCTAAGCA
CTGCAGTAGAAAGGCTCTGCGACATAAAATGAGCCTATTCTAGGGAGACA
TGTCATCTTGTATGAGGGTTGAGTGTCCAAGTGTCCTTCCCCCAGGAAAA
ATGACACGAGAGCGGACCAAGACCCCTCCGGGTGATGAGCCTGGGAGGAG
GTTTTGTGTAATGCCCCTATTTTTGCACAATGGGGATTTGACCTCTATCT
CCACTCTCAGTACTGGGTGGCCTGTTGCCTTTTAAATAAAAGAATAGGGC
GAGATGTGAGGAGCCGCCCTTGCCATCGCCAATACAAGATGGCGCTGATA
TCCGGTGTTCTAACTGGTAAACAAGTTTTCTGCTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCATGTAACCAAGGCTCTACACATACGGCC
AGAAGTCAATCATTGTGGGAGGGGTAGAAGCATTCTTGGCTTTATTCTCT
GAATCTGTTAGCTGTGTGAGTGACCTCCAATCTGACCACCAGACCTGAGC
GCTTCTCCCTGGCTCTGTGGGAGGCAGCTTATGGTGAGAAGTATCTTAAA
GTGGCTTTCAAGTTCCTATCAGCTTGTGGCTCAGCCCAGTGCAAAGTCCC
TTGGGCTTTAATTACTTCCACCCTTAAATAAGAGCTGAAGATGGCTGCAG
CTTTCTCCTAGACTCCTCCAGGAGAAACTCTAAAGCCAGAGCCTGGGGGC
AGCATTGTGTGTCCACCTTGCCACTGAGAACATCTACGGAAATTGGACAC
TCTGGCCCCAGCATCCACACGCTTGACTGTTGGCCACAGTAACACAGGTG
TGGATGGTCCCCAGAGCCAGGGTCCAGGAGTGCACTGAGGATCCCTGGGG
CTTCAAGGAACCCACAGCTCTGTCCAGACGGTGAGTGAGGGTTTGTGGTT
TCTGAGGGAGGTGTGGGCCTGAAGAAGGGTGAATTGAAGTCATGAGGATA
TAGTGAGAAATGGTTCCTTTTTTGGGGGGAAAGTAGGTAAGTGAATTTTT
TAACAAAAGATTAAATTATAAGAATGAAAATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_p19.g1 MSMg01no153_p19.g1 CHROMAT_FILE:
MSMg01no153_p19.g1 PHD_FILE: MSMg01no153_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:30 2005
         (635 letters)



>mm_chr17_34513627_34514661
          Length = 1035

 Score = 1203 bits (622), Expect = 0.0
 Identities = 628/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatgtaaccaaggctctacacatacggccagaagtcaatcattgtgggaggggtagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accatgtaaccaaggctctacacatacggccagaagtcaatcattgtgggaggggtagaa 260

                                                                       
Query: 61  gcattcttggctttattctctgaatctgttagctgtgtgagtgacctccaatctgaccac 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcattcttggctttattctctcaatctgttagctgtgtgagtgacctccaatctgaccac 320

                                                                       
Query: 121 cagacctgagcgcttctccctggctctgtgggaggcagcttatggtgagaagtatcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagacctgagcgcttctccctggctctgtgggaggcagcttatggtgagaagtatcttaa 380

                                                                       
Query: 181 agtggctttcaagttcctatcagcttgtggctcagcccagtgcaaagtcccttgggcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggctttcaagttcctatcagcttgtggctcagcccagtgcaaagtcccttgggcttt 440

                                                                       
Query: 241 aattacttccacccttaaataagagctgaagatggctgcagctttctcctagactcctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattacttccacccttaaataagagctgaagatggctgcagctttctcctagactcctcc 500

                                                                       
Query: 301 aggagaaactctaaagccagagcctgggggcagcattgtgtgtccaccttgccactgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagaaactctaaagccagagcctgggggcagcattgtgtgtccaccttgccactgaga 560

                                                                       
Query: 361 acatctacggaaattggacactctggccccagcatccacacgcttgactgttggccacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatctacggaaattggacactctggccccagcatccacacgcttgactgttggccacag 620

                                                                       
Query: 421 taacacaggtgtggatggtccccagagccagggtccaggagtgcactgaggatccctggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacacaggtgtggatggtccccagagccagggtccaggagtgcactgaggatccctggg 680

                                                                       
Query: 481 gcttcaaggaacccacagctctgtccagacggtgagtgagggtttgtggtttctgaggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcttcaaggaacccacagctctgtccagacggtgagtgagggtttgtggtttctgaggga 740

                                                                       
Query: 541 ggtgtgggcctgaagaagggtgaattgaagtcatgaggatatagtgagaaatggttcctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtgtgggcctgaagaagggtgaattgaagtcatgaggatatagtgagaaatggttcctt 800

                                         
Query: 601 ttttggggggaaagtaggtaagtgaatttt 630
           ||||||||||||||||||||| ||||||||
Sbjct: 801 ttttggggggaaagtaggtaaatgaatttt 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)