BAC Information

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BAC

Clone NameMSMg01-156D20
Chromosome17 (Build37)
Map Location 40,733,621 - 40,734,000
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107
Downstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156D20.T7 (MSMg01no156_d20.b1)MSMg01-156D20.TJ (MSMg01no156_d20.g1)
ACCAG357029AG357030
length828752
length of high quality
(start - end)
---365 (388 - 752)
definitionCHROMAT_FILE: MSMg01no156_d20.b1 PHD_FILE: MSMg01no156_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:19 2005CHROMAT_FILE: MSMg01no156_d20.g1 PHD_FILE: MSMg01no156_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCGG
TCAGATCTGAGACCCATTTATAAATGAAACTATATGGATATTCTGAACTC
TACCTCCTAGACTGCATCATATAAATATACTATTAATTATGTAAATCTGT
AACATTACAGACGCGATACCCTAAGTACCCCAGTTTCCACTCACCCCAAC
TCCTCTGCCGATCATGACCAACTTTATGCATCCGGCGGTACACGTGCCAT
GGAGCAAATATTGTGTGACAGACCAATGAGACACTACTTTCAGTTTATCA
TGTGACAAGCCCGCCTTATGACATCCATACTAACTTGCCACAAAAGACCG
AATAAAGTGTCCATTTATTTTATGCCCCCCCCCCCCCCAGTGAGCCGACA
CGATTTACACGCATTGCCCCCCCACCCGCCAGCACGTAAATTTCGCAACC
TGCTGTTCACCGCTCCATGTAACATGATCTGAGCGCCCCCGCATTTGTGC
GTTTGATTATGCCCCCGCGAATGAGTTTCCTAATTAACACCTCTTTCCTC
TTGGTAATCACTTATTTCTTCCACCCTGCCTATCTTGTGCCCCATTGATT
CCCTCCTTAATCTCAACCTATTATACCAACCTCTCGTCTCACTCTTTTGT
CCCCCGTTACCCCTCATTGCCTTCTCCACTTAACCCCTTACCGTACTGCC
CGTTGGACTTTAGACCCCCTTACTTCGCTCACCCCTCTCATATCGGCTAC
CTCATTTCTCCGCCCCCCTACACTTCTATTTAAACGCGCCGCTACACTCT
CTCCGTAAAAATATATTTCACCCCTTCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGACCCCTGCTGCTGCTGGCTATCAA
TGACTAAGGAAGCATCTGCTGCAGCACTATCAATGACTCCAGCCTCATAA
TTGAGAAGGAGAAACATTGAAGGCTTTTGCAACAACCTCTTCCTCTCTCC
CCAAGGGGGGGGGGAAACAATCATGGTGGGAAGCTGTTGAAACCATAGTC
TGTGTGACACCAGGAAAGAATTATAATAAGATAAGGACAATAAACGACAG
TAGATGAATATAGGCTCATTGATTACACCAATTTTAGAATTAGGTGATGG
ATATTGATGAAGAAATATTTTTTCATATCAGCGCCCAAAGCATATGAGGA
TGATTGTAATATAAATTTTCACACGCACCTAAACTTTAGCAATAAAATAT
ATTAAATTACAACATTAAGAGAGGGGAAGTGCTGAGATAGACACAGAAAG
GTTTTAATCTGATTCCTATACACATGCAATGGGACCTGGGCATGGCACTC
ACACATAGAAACAAGTACACACACACACACACACACACACACACACACAC
ACACATTAAGAGAGATAGGGAGTTGAGAGAGCAAGAGAACCCTTTAGAAA
TTATTGTTTTGTACAAATATTTGAAAATATAACAAATTAAAGACAAATGA
AAATGTCCATCATATAAAATGTGTCACAAAGGAATATATATTAATGTCAA
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_d20.g1 MSMg01no156_d20.g1 CHROMAT_FILE:
MSMg01no156_d20.g1 PHD_FILE: MSMg01no156_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:19 2005
         (365 letters)



>mm_chr17_40733437_40734200
          Length = 764

 Score =  609 bits (315), Expect = e-179
 Identities = 358/381 (93%), Gaps = 17/381 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcatatgaggatgattgtaatataaattttcacacgcacctaaactttagcaataaaa 60
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 185 aagcatatgaggatgattgtaatataaattttcacatgcacctaaactttagtaataaaa 244

                                                                       
Query: 61  tatattaaattacaacattaaga-----gagggg-aagtgctgagatagacacagaaagg 114
           |||||||||||||||||||||||     |||||| |||||||||||||||||||||||||
Sbjct: 245 tatattaaattacaacattaagaaaagagagggggaagtgctgagatagacacagaaagg 304

                                                                       
Query: 115 ttttaatctgattcctatacacatgcaatgggacctgggcatggcactcacacatagaaa 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttttaatctgattcctatacacatgcaatgggacctgggcatggcactcacacatagaaa 364

                                                                       
Query: 175 caagtacacacacacacacacacacacacacacacacacacaca----------ttaaga 224
           ||||||||||||||||||||||||||||||||||||||||||||          ||||||
Sbjct: 365 caagtacacacacacacacacacacacacacacacacacacacacacacacacattaaga 424

                                                                       
Query: 225 gagatagggagttgagagagcaagagaaccctttagaaattattgttttgtacaaatatt 284
           ||| ||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 425 gaggtagagagt-gagagagcaagagaaccctttagaaattattattttgtacaaatatt 483

                                                                       
Query: 285 tgaaaatataacaaattaaagacaaatgaaaatgtccatcatataaaatgtgtcacaaag 344
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgaaaatataacaaattaaagccaaatgaaaatgtccatcatataaaatgtgtcacaaag 543

                                
Query: 345 gaatatatattaatgtcaaat 365
           |||||||||||||||||||||
Sbjct: 544 gaatatatattaatgtcaaat 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 764
Length adjustment: 9
Effective length of query: 356
Effective length of database: 755
Effective search space:   268780
Effective search space used:   268780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)