BAC Information

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BAC

Clone NameMSMg01-156H24
Chromosome17 (Build37)
Map Location 11,986,428 - 11,986,746
singlet/doubletsinglet
Overlap genePark2
Upstream genePacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156H24.T7 (MSMg01no156_h24.b1)MSMg01-156H24.TJ (MSMg01no156_h24.g1)
ACCAG357227AG357228
length755764
length of high quality
(start - end)
324 (46 - 369)277 (74 - 350)
definitionCHROMAT_FILE: MSMg01no156_h24.b1 PHD_FILE: MSMg01no156_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:39 2005CHROMAT_FILE: MSMg01no156_h24.g1 PHD_FILE: MSMg01no156_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATAGGGTGGACCAGCTGAAGAGACAGATCAGGAAAATTACAA
CCCCAGTGTCAAAAACCTCTGGGGGACAAAAACGGTCTCCAAGTCTTTGA
GAAACTCTGTAAGAATTCCCTACTGGGTCGTGAAGGCTGGACTGGACCTG
ATGCCACTTGTACAAGTCACAGAGAAGAGAGGCAGGAGGAGTTCCCCAGA
GAGCCTGCAATCCTTCAGTTCCTGATCTCAGTGGAGGCCTTACCTGAGCA
GGGTGCTGGGGACTGTCTGAGGCAGCTCCCTTTTGTAGGGACTACTTTGA
ACAATAAGTCTCCATCCTCTAGGCTGCCGCCCCGCACCAGTGGTTTGACT
CAGTTTAACTCCCTCCCTAGGCNGCCACACTCTGGTCAGCATTAGGGGGA
GGGTAATCACTCACACACATGCAGACTGAACCTGCCCTCTGAATTTCCAG
GTTCCTGGGGTCTCGATGCCTAAGCCACCTTGAGGTTCCAAAGCATGACA
GGTTTGTTTCCTGCTGTCCCAACAGCAGTCGCTGGTCTGTGTCTCTGCTC
TGCATTGTCAGCTTCCAGCCTACTCCCTAGCTTCTGACTTGACAGACATT
TCCCAGCTTCCCCCCTTAGCCTCTTTGTCCTTGTGGATATATTCCCTTCC
TAGTCTGCTTCCGTGGAGGTCAGTGATATTGGAGACCCAGAGTCATCTGG
CCTCA
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGGTACT
GTTAGAAGGGTTAGGAGGTATGACCTTATAGGAGTAAGTGTGTCACTGTG
GGTATGGGCTTTGAAGCTCTGTCCAGTGTGGAAGAGTCAGTCTGCTCCTT
GGCTTCCTTTGGATGAAGATGTAGAACTCTCAGCTGCATTTGTGCCATGC
CTGCCTGAATGCACCATGCTCTTGTTTTTATGATACAGGACTGAACCTCT
GAACCGGTAAGTTTTTTTTTTTTCCCCCCCGCCCCCCATAAGAGTTGCCT
TGGTCATGGTGTCTGTTTCCCCCCCCCAAACAATAAATCTGTCTGCCCTG
TGTGTGTGCACGTGTCGCTCGCCCCTCCCCCTACCACAAACCTTCACACA
ACCATATTATAAACCTACCACTGTACAAGACATGTGCCTTTTCCTACATT
ATTTGTCCCTATCCCTATCCTTAAACAGTTCTAATGGATCTATTCCATCC
CCCTACGATGCTCTACTATATTCCTATGGTCTTTTTCTACTACTGTCTGC
TCCCCCCCCCCAGTTTACTTTTTCTTGCATTTTTTCGCCTCCTCTCCCCT
TTCGGTCCTTTTTCGCTATTTTCCCCTATTCTTGTTCTCCCCTTTTTTTT
CCCCCCTGTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_h24.b1 MSMg01no156_h24.b1 CHROMAT_FILE:
MSMg01no156_h24.b1 PHD_FILE: MSMg01no156_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:39 2005
         (324 letters)



>mm_chr17_11986225_11986948
          Length = 724

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatagggtggaccagctgaagagacagatcaggaaaattacaaccccagtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactatagggtggaccagctgaagagacagatcaggaaaattacaaccccagtg 263

                                                                       
Query: 64  tcaaaaacctctgggggacaaaaacggtctccaagtctttgagaaactctgtaagaattc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaaaaacctctgggggacaaaaacggtctccaagtctttgagaaactctgtaagaattc 323

                                                                       
Query: 124 cctactgggtcgtgaaggctggactggacctgatgccacttgtacaagtcacagagaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctactgggtcgtgaaggctggactggacctgatgccacttgtacaagtcacagagaaga 383

                                                                       
Query: 184 gaggcaggaggagttccccagagagcctgcaatccttcagttcctgatctcagtggaggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 gaggcaggaggagttccccagagagcctgcaatccttcagttcctgatctcagtggaggt 443

                                                                       
Query: 244 cttacctgagcagggtgctggggactgtctgaggcagctcccttttgtagggactacttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttacctgagcagggtgctggggactgtctgaggcagctcccttttgtagggactacttt 503

                              
Query: 304 gaacaataagtctccatcc 322
           |||||||||||||||||||
Sbjct: 504 gaacaataagtctccatcc 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)