BAC Information

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BAC

Clone NameMSMg01-156J14
Chromosome17 (Build37)
Map Location 92,804,501 - 92,925,007
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043741, LOC100043742, EG640442, LOC627395
Downstream geneLOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156J14.T7 (MSMg01no156_j14.b1)MSMg01-156J14.TJ (MSMg01no156_j14.g1)
ACCAG357298AG357299
length742748
length of high quality
(start - end)
331 (46 - 376)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no156_j14.b1 PHD_FILE: MSMg01no156_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:46 2005CHROMAT_FILE: MSMg01no156_j14.g1 PHD_FILE: MSMg01no156_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,804,501 - 92,804,825)(92,924,763 - 92,925,007)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAGAGTCCACAAATTTCCTTTCCAAATAATCTCTCCCCAATAA
TTATACAAAAGTTAGGCATATCATCACTTACAAATCTATGTTATTTGTTA
AAGTTTTCTGAAGTGTTATTAAGAGATAGATTCTAGATGGTAGATTGATG
ATATTGATGATAGATACATAAAAGCATAGATAATAAAGGCAGACAGTTGA
TAGATAAATGATAGATTATAGATAGCTATAGAGATGATATAGTTGACAGA
TAGATAGATGGAAATATTTCAGTCCATTTGCTCCCAATCCCCTGTATACT
TACTGGCTATTATGTTTTTTCTTCCCATCTCCCCCATCTTTGTTTTCTGG
TCAATGAGGGCTCAGATACACCCCCCCTGAAAATGCTCTCTGGTAAATCC
TTTCTCTTTATAAAACCCATAGACAACTTCTCTTAAACAGTTAATATCAT
GATTTTTATAAATGATTGTTCTTCAGCTATAATTTGAATAACACCACCCA
GATGAGACATGTTAGATTCTCTAGATTGCAAGTCTACTGCTCAATATTTT
GTGGGGTTCTTCTCCATTCATATCCAAACCACTCAAATTAAAGAAAATAC
TCCCCCCCCCCGTCTACGCTTTGCACCTTGAAGGATTTAGAAATTGAACA
ATACGTGTAGATACACACATATTTTGAATGTGTTTTGTGCTG
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACTCATTTTCTTCTATCTCCTCT
GCCCAACTAACCTAAAGTACTGGAGGTTGAAAATAATTCAAAGGAAACAG
TTGTGAAGGACACACAGGTTCTAGGCACAACACAATTAAAATAAGTTGAA
ATGGGTGATTTATAGAACAACCCTGCTCTCTGTACCTTCTCAACCACAGA
AGCAAGAGTCCAGAGGAATAGTTGTTCATTCCTGCAGATACATTTGTGAA
ATATTGATGGATGAGGAATGCATGTGGAACTGTAAAGTCAGGAGGAATGT
AAGAAAAAGTAAGTATTTCTGTAGACTCACCCCCTGCCCTGGTACTTATA
CACAGAGCAAAGACATGAACTGTCCCCTCCAAATTAAATTACGGAGTTAT
TCTCTGATGAAGTCATGTTTGTGCTACAGACCTATTTACTTAACTAGAAT
GTCATGAATTTGGAACAGGTGAACTTGAAGTTGAGCTCCAAATTATTTTG
GGCTACTTTCAGTCCCCCCAAAAGCCATTTATAGTGACATTGTCTTATGT
ATCTAGTCTAGCATCATTATGATAATTAGGTAAAATTTTTGGAATATACA
CATTTCCAGACCAATATTATCTACCAGAACTAACGCTAATATTATAAAAA
GCACTACAACCTGCAGATGATATACATGATATCTCCAAAAATATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_j14.b1 MSMg01no156_j14.b1 CHROMAT_FILE:
MSMg01no156_j14.b1 PHD_FILE: MSMg01no156_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:46 2005
         (331 letters)



>mm_chr17_92804297_92805027
          Length = 731

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaagagtccacaaatttcctttccaaataatctctccccaataattatacaaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcagaagagtccacaaatttcctttccaaataatctctccccaataatgatacaaa 264

                                                                       
Query: 65  agttaggcatatcatcacttacaaatctatgttatttgttaaagttttctgaagtgttat 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 agttaggcatatcatcacttacaaatctatattatttgttaaagttttctgaagtgttat 324

                                                                       
Query: 125 taagagatagattctagatggtagattgatgatattgatgatagatacataaaagcatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagagatagattctagatggtagattgatgatattgatgatagatacataaaagcatag 384

                                                                       
Query: 185 ataataaaggcagacagttgatagataaatgatagattatagatagctatagagatgata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataataaaggcagacagttgatagataaatgatagattatagatagctatagagatgata 444

                                                                       
Query: 245 tagttgacagatagatagatggaaatatttcagtccatttgctcccaatcccctgtatac 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagttgacagatagatagatggaaatatttcagtccatttgctcccaatcccctgtatac 504

                                    
Query: 305 ttactggctattatgttttttcttc 329
           |||||||||||||||||||||||||
Sbjct: 505 ttactggctattatgttttttcttc 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no156_j14.g1 MSMg01no156_j14.g1 CHROMAT_FILE:
MSMg01no156_j14.g1 PHD_FILE: MSMg01no156_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:46 2005
         (245 letters)



>mm_chr17_92924563_92925207
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactcattttcttctatctcctctgcccaactaacctaaagtactggaggttgaaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactcattttcttctatctcctctgcccaactaacctaaagtactggaggttgaaaataa 386

                                                                       
Query: 61  ttcaaaggaaacagttgtgaaggacacacaggttctaggcacaacacaattaaaataagt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagaggaaacagttgtgaaggacacacaggttctaggcacaacacaattaaaataagt 326

                                                                       
Query: 121 tgaaatgggtgatttatagaacaaccctgctctctgtaccttctcaaccacagaagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaaatgggtgatttatagaacaaccctgctctctgtaccttctcaaccacagaagcaag 266

                                                                       
Query: 181 agtccagaggaatagttgttcattcctgcagatacatttgtgaaatattgatggatgagg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtccagaggaatagttattcattcctgcagatacatttgtgaaatattgatggatgagg 206

                
Query: 241 aatgc 245
           |||||
Sbjct: 205 aatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)