Query= MSMg01no157_b21.b1 MSMg01no157_b21.b1 CHROMAT_FILE:
MSMg01no157_b21.b1 PHD_FILE: MSMg01no157_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:24 2005
(318 letters)
>mm_chr17_62457607_62458323
Length = 717
Score = 576 bits (298), Expect = e-169
Identities = 310/314 (98%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 5 gaattctcagcatttgcatttacctaatgaccatatactacagattatttattcaaaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctcagcatttgcatttacctaatgaccatatactacagattatttattcaaaatt 458
Query: 65 gatactaattttaggaatgttttagtgagaatctcctgtgtactgctcagccaaggatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gatactaattttaggaatgttttagtgagaatctcctgtgtactgctcagccaaggatca 398
Query: 125 cagatttttaggaacccaatacacaaggatatataccttgtttattcaacatcttctaag 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 397 caga-ttttaggaacccaatacacaaggatatataccttgtttattcaacatcgtctaag 339
Query: 185 cttttaaagagattttctgacagatcattgagttaagggtaggcatttcatcttgaaagc 244
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 338 cttttaatgagattttctgacagatcattgagataagggtaggcatttcatcttgaaagc 279
Query: 245 agaagatgtgagataaaggagatcaatgaaagggggaggggaagaaattggaaagtagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agaagatgtgagataaaggagatcaatgaaagggggaggggaagaaattggaaagtagtg 219
Query: 305 gagtatgaggagaa 318
||||||||||||||
Sbjct: 218 gagtatgaggagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_b21.g1 MSMg01no157_b21.g1 CHROMAT_FILE:
MSMg01no157_b21.g1 PHD_FILE: MSMg01no157_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:24 2005
(674 letters)
>mm_chr17_62344442_62345518
Length = 1077
Score = 1270 bits (657), Expect = 0.0
Identities = 671/677 (99%), Gaps = 3/677 (0%)
Strand = Plus / Plus
Query: 1 tgtccctggctatactgagagcctcctcccacgaccagccataggacacacatatgcata 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgtccctggctatactgagagcctcctcccacgaccagccataggacacaaatatgcata 260
Query: 61 agtgcacattgctctgtgtcactgagaagcaaagcgttgttgacagaggacattgttgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgcacattgctctgtgtcactgagaagcaaagcgttgttgacagaggacattgttgac 320
Query: 121 ttatcagaatcattggccagatgctagtgggtcataaatcagctatcaatgtctcgaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatcagaatcattggccagatgctagtgggtcataaatcagctatcaatgtctcgaaag 380
Query: 181 acaaatgagagagaataaagggagagaagttagt---tacaaggctgcaaaaatgaaaat 237
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 acaaatgagagagaataaagggagagaagttagtcattacaaggctgcaaaaatgaaaat 440
Query: 238 actaatattctgaaggctagctactagagaggcattcatggtcccatactctatgcaaga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actaatattctgaaggctagctactagagaggcattcatggtcccatactctatgcaaga 500
Query: 298 agtggccagacacatgcacactgtcaatgataaaaagaaaaatttctgggtcagtaggaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtggccagacacatgcacactgtcaatgataaaaagaaaaatttctgggtcagtaggaa 560
Query: 358 aactggttggctaagcaagcctttgacaagattgtttatatgatgttctactgcaaccat 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 aactggttggctaagcaagcctttgacaagattgtttatatgatgttgtactgcaaccat 620
Query: 418 agtttttactttgggaaattatcgtaaaatatttgtatcccttcagcaaaaacgaagaca 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 agtttttactttgggaaattatcgtaaaatatttgtatcccttcagcaaaaatgaagaca 680
Query: 478 ggcctatagagatctttgcctttaaaacagcaactttaaaaattggaaatagcacatgaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcctatagagatctttgcctttaaaacagcaactttaaaaattggaaatagcacatgaa 740
Query: 538 taaaagaaacaagatggcttccacaaacgctaaccagaacagttaaatatttccaattta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaagaaacaagatggcttccacaaacgctaaccagaacagttaaatatttccaattta 800
Query: 598 gtaaattggtctatatggaaattagtgtttttaaataaagaaaacatattaaagggcatg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtaaattggtctatatggaaattagtgtttttaaataaagaaaacatattaaagggcatg 860
Query: 658 catgatcatttattttg 674
|||||||||||||||||
Sbjct: 861 catgatcatttattttg 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1077
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1067
Effective search space: 708488
Effective search space used: 708488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
