BAC Information

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BAC

Clone NameMSMg01-157K14
Chromosome17 (Build37)
Map Location 79,333,957 - 79,334,273
singlet/doubletsinglet
Overlap geneCebpz
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik
Downstream gene2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157K14.T7 (MSMg01no157_k14.b1)MSMg01-157K14.TJ (MSMg01no157_k14.g1)
ACCAG358080AG358081
length735735
length of high quality
(start - end)
321 (33 - 353)---
definitionCHROMAT_FILE: MSMg01no157_k14.b1 PHD_FILE: MSMg01no157_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:03 2005CHROMAT_FILE: MSMg01no157_k14.g1 PHD_FILE: MSMg01no157_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTACTTG
GAAAAGTAGCATTAAAGCCTGCACACTCGTATTAAAATTTACAACATGCA
ACACTTTGAATAAAGTGTCCACCTGCTCCCTCACTTTGTCGTCACCTATC
TGGGAGTAAGGGTATGCTCTGTTCACCCCTGTTAAAATCGCACTGAGCAT
TTTTGATTCAATGTCTTTTTTCTTGATACAAGTCCGAAAGAAACAAAAAT
AAAGAGTAATTAATTTGTTAGCCAACTCACTTTCTTCATGGGAGAGGACC
ATTTGGTTTAGAAAGCAAATTGCATAATACTGAGCTTTGGGGCTGATATT
TGAGCGGAAGAGCAGCCTTTCTATTTCTGCACACACAACTCCTTTCATAT
TGGGATGCTTCCGAAGTAACACTTCTAACAGATGGGAGGCTTTCGTAGCA
ATTCTGTTCTGAGGATCTCCCAGCTTATTTATCACCTGCACAAGAAGAGC
CTTTTCCTCCTCGGGTTTATCACAGAGCAGCTCATGGGCAGCTACCAGGG
CCCGCGTTTTAGTGGTTACCAAGGAATCATGACTTAAAGTCTCGAGGACC
TGGACGAATTCTGCTACCAAGTGTTTCAATTGGTGTTCATAATACCACAG
TATCAGTCTTCTATCTCTCGAGTCCTTGTTGCCACTGGACAACTCTTCCA
GTTTGTGGAAAGGATGCTGGCTGAAAACCCGGAGT
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTAAGGAGAATAATTTTGATTCAGAAGGTTGGGGGGGGAA
CAAATTCCAATAAAGGGAAAGGGGGGGGGCCCTTGGTGGAAAATCCAATC
TAAGGAACTTTTTGGGGGGAAGGGGAAAAAAGGAAGCTGGGCTAAAACCC
CAGGACCAAAACAAACCTATTAAAATAAAGCATTTAATTGGGGGCCCGCT
CAGGATTCCAAAGGGTAAGGCCCAAGGACCATCAGGACGGGAACTGGGCA
CCAGGAAAACGGGAACAGGACCCGGGGGCACCAACGGAAATCCCACTTCA
GTTTCCACACCCCCCGCCCGAAAGAGTTAATGGGAAAGGGCAGGGTTTTT
TGAAACCTCAAAGTTCACCCCAAGGGACGCACCCCTTCCACCAAGGCCAC
ACCCCCAAATCCTTCCCAAACGGTCCCACCAACTGGGAACCAAGGGTCCA
AACTTGAGCCGGGGAAACCCATTCCCATCCAAACCACCACAAACCCATAA
ATATACGGAGTAACCCAGGGGAAGGGACCTCCATTTAAAACCAAAGGAAA
CTCAAATTTCAAAAAAGAATAATTGGCTGAAAACCAAAGATCAAACGGGC
CGGTCTTACCTCGAAGCCTTCTATGCTCTTCTCGGAACCGGTTGCTCCTC
CCCAGCAACAGAAACTTTCAACCGGAACCCTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_k14.b1 MSMg01no157_k14.b1 CHROMAT_FILE:
MSMg01no157_k14.b1 PHD_FILE: MSMg01no157_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:03 2005
         (321 letters)



>mm_chr17_79333753_79334473
          Length = 721

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattacttggaaaagtagcattaaagcctgcacactcgtattaaaatttacaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattacttggaaaagtagcattaaagcctgcacactcgtattaaaatttacaaca 264

                                                                       
Query: 65  tgcaacactttgaataaagtgtccacctgctccctcactttgtcgtcacctatctgggag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaacactttgaataaagtgtccacctgctccctcactttgtcgtcacctatctgggag 324

                                                                       
Query: 125 taagggtatgctctgttcacccctgttaaaatcgcactgagcatttttgattcaatgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagggtatgctctgttcacccctgttaaaatcgcactgagcatttttgattcaatgtct 384

                                                                       
Query: 185 tttttcttgatacaagtccgaaagaaacaaaaataaagagtaattaatttgttagccaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttcttgatacaagtccgaaagaaacaaaaataaagagtaattaatttgttagccaac 444

                                                                       
Query: 245 tcactttcttcatgggagaggaccatttggtttagaaagcaaattgcataatactgagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcactttcttcatgggagaggaccatttggtttagaaagcaaattgcataatactgagct 504

                            
Query: 305 ttggggctgatatttga 321
           |||||||||||||||||
Sbjct: 505 ttggggctgatatttga 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)