BAC Information

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BAC

Clone NameMSMg01-157O18
Chromosome17 (Build37)
Map Location 35,213,166 - 35,354,617
singlet/doubletdoublet
Overlap geneLy6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta
Upstream geneH2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d
Downstream geneNfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157O18.T7 (MSMg01no157_o18.b1)MSMg01-157O18.TJ (MSMg01no157_o18.g1)
ACCAG358273AG358274
length770744
length of high quality
(start - end)
317 (30 - 346)293 (58 - 350)
definitionCHROMAT_FILE: MSMg01no157_o18.b1 PHD_FILE: MSMg01no157_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:22 2005CHROMAT_FILE: MSMg01no157_o18.g1 PHD_FILE: MSMg01no157_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,213,166 - 35,213,478)(35,354,320 - 35,354,617)
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATACAAAGGAA
AGCTCTGTGGGGCCTCCAGTCATTTTCAGGGTACAGGTGCTCAGATGCCC
ACTACCCTCTTCCTTGCTGTGACCCTCTCGGTGAAATGTTTCTTTTGTTG
GTACTGGGACTGGAACCCAGGGCTACCCAGGAGTTCGATAAACCCTCTAA
GACTCCCTGTCCCCACCCAGTCTCTTAATCCCTAACCTCCTTTACAGCCA
CAGTTCCATCCTGGAAACCAATTCCTTCTTAGAGGAAGGACATACATCCT
TCCAGCCCAGCCCCTGATTAATTCTTTCCTGCAAGGTAGTAAAGCCAGTT
TTTTTAATTCCCCCCCCCCACTGTTGAAGCTTGGGGTTAGGGGAGTGAAT
CAAAGGCATGTGAGACAGACGGGGTAGGGCCCCCAGCAGCTGGGCTTGGT
GGGTGGGGTGGGGTGTNANANANTTTTATTTATCTCCTCTCCCATCCTCT
TTCATCCACTCCCCCTCCCTCTTTATTCCTTCTTTTCTCCTCTTCTTTTA
TCGCCCTATTCACCCCACTACTATCTCACTACTTTTTTCCCCCTCTCCCT
TTTTTTTCTTTTCCTCTTCCTTTCCTCTCCTCCCCTCCACTTATTTTTCA
TCTATTTCCTCCTCTCCTTTTTTTCTCTTACACTTCCTCCATATTTTTCA
TCCTTACCCTCTCCCTATATTCTTCTCCCTTTCCCTTTTACTCTTTTTTT
GCCCTCTTTTCCCTTCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTCAATCCTGTTGTCTGGCGCTAGGTCATAAACTCCACAGAG
GCCTCGGCCGAAAGGTCTTGCCAATGGATGGGCTTAGCTGAGTTCCCTGA
CTCTGTATCTATTAGGGGACAACCTCTGTCCAGTCACTTTTCTGCACAGC
TGTTCCGGAGGCGTCAAATCTAAACCTAAAACCTGACGCCCAGCCGGGTT
TGACACAAAGACTCCTGTTGCAAAAAAAAAAAAAATGGTTTCCGTATGCT
TTTGTTTTGTTAACTTGTCTTTTTTTCTTTTTTAAGATTTATTTTTTATT
TATATGACCACACTGCTGTTGTCTTCAGACACAACAGAAGAGTACATCAG
ATCCCATTACAGATGATTGTGAGCCATCATGTGGTTGCTGAGATTTGAAC
TCAGGACCTCTGACAGAGCATAGTGCTCTTAACCACTAAGCCATCTTTCC
AGCCCACTAACTTGTCTTCGTAACAGTATGAGCTACACATCTTTTTTTTG
GGGGGGGGGTGTTNNNNNNNNNNNNNNNNNNNNTTNCNNNNNNNNNNCTT
TNTNCTTTTCTTTCTCTTTTCCTTCTTCTTCCCCCTTCCTCCTTTCCTTT
TCTTTCTCCTTTTCTCTTTCCTCTTTTTCCCCCTCTCTTTTTCCTCTTTT
CTCTTTCTCTTCCCTTTCTCTCTTCTCTTTTTTCTCCTCTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_o18.b1 MSMg01no157_o18.b1 CHROMAT_FILE:
MSMg01no157_o18.b1 PHD_FILE: MSMg01no157_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:22 2005
         (317 letters)



>mm_chr17_35212962_35213678
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatacaaaggaaagctctgtggggcctccagtcattttcagggtacaggtgctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatacaaaggaaagctctgtggggcctccagtcattttcagggtacaggtgctca 264

                                                                       
Query: 65  gatgcccactaccctcttccttgctgtgaccctctcggtgaaatgtttcttttgttggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgcccactaccctcttccttgctgtgaccctctcggtgaaatgtttcttttgttggta 324

                                                                       
Query: 125 ctgggactggaacccagggctacccaggagttcgataaaccctctaagactccctgtccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgggactggaacccagggctacccaggagttcgataaaccctctaagactccctgtccc 384

                                                                       
Query: 185 cacccagtctcttaatccctaacctcctttacagccacagttccatcctggaaaccaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacccagtctcttaatccctaacctcctttacagccacagttccatcctggaaaccaatt 444

                                                                       
Query: 245 ccttcttagaggaaggacatacatccttccagcccagcccctgattaattctttcctgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttcttagaggaaggacatacatccttccagcccagcccctgattaattctttcctgca 504

                        
Query: 305 aggtagtaaagcc 317
           |||||||||||||
Sbjct: 505 aggtagtaaagcc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_o18.g1 MSMg01no157_o18.g1 CHROMAT_FILE:
MSMg01no157_o18.g1 PHD_FILE: MSMg01no157_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:22 2005
         (293 letters)



>mm_chr17_35354120_35354817
          Length = 698

 Score =  514 bits (266), Expect = e-150
 Identities = 288/298 (96%), Gaps = 5/298 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaatcctgttgtctggcgctaggtcataaactccacagaggcctcggccgaaaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 498 cttcaatcctgttgtctggcgctaggtcataaactccacagaggcctcgggagaaaggtc 439

                                                                       
Query: 61  ttgccaatggatgggcttagctgagttccctgactctgtatctattaggggacaacctct 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgccaatggatgggcctagctgagttccctgactctgtatctattaggggacaacctct 379

                                                                       
Query: 121 gtccagtcacttttctgcacagctgttccggaggcgtcaaatctaaacctaaaacctgac 180
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 gtccagtcacttttcttcacagctgttccgggggcgtcaaatctaaacctaaaacctgac 319

                                                                       
Query: 181 gcccagccgggtttgacacaaagactcctgttgc-----aaaaaaaaaaaaaatggtttc 235
           ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||
Sbjct: 318 gcccagccgggtttgacacaaagactcctgttgcaaaaaaaaaaaaaaaaaaatggtttc 259

                                                                     
Query: 236 cgtatgcttttgttttgttaacttgtctttttttcttttttaagatttattttttatt 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgtatgcttttgttttgttaacttgtctttttttcttttttaagatttattttttatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 698
Length adjustment: 9
Effective length of query: 284
Effective length of database: 689
Effective search space:   195676
Effective search space used:   195676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)