Query= MSMg01no158_d04.b1 MSMg01no158_d04.b1 CHROMAT_FILE:
MSMg01no158_d04.b1 PHD_FILE: MSMg01no158_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:41 2005
(666 letters)
>mm_chr17_14264294_14265359
Length = 1066
Score = 1232 bits (637), Expect = 0.0
Identities = 656/663 (98%), Gaps = 2/663 (0%)
Strand = Plus / Plus
Query: 5 gaattcataccaaaataaattagtcaataaataaacagccagttgtctacacaggccttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcataccaaaataaattagtcaataaataaacagccagttgtctacacaggccttt 262
Query: 65 aatctgaaatcatgggattggcatatcaaattcctgggagccattggtcagccaacccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatctgaaatcatgggattggcatatcaaattcctgggagccattggtcagccaacccag 322
Query: 125 gtatttggccagctccaggccagtgagtgaacctgtctcaaaaaaaaggcctaaggtatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtatttggccagctccaggccagtgagtgaacctgtctcaaaaaaaaggcctaaggtatt 382
Query: 185 aggaaaagcagctgggggacttctggcctctacactctcttcactgaggtgaagttaata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggaaaagcagctgggggacttctggcctctacactctcttcactgaggtgaagttaata 442
Query: 245 cagataaaaggggcaaagggggatgggcacgtgtgcatgcacacacacacaca--tacaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 443 cagataaaaggggcaaagggggatgggcacgtgtgcatgcacacacacacacacatacaa 502
Query: 303 actcttacatatattcagattcacacttcacacaatcttataggaacaggtatacacaca 362
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 actcttacacacacccagattcacacttcacacaatcttataggaacaggtatacacaca 562
Query: 363 cacacaaatctgtaaactcacatactcctacctacactgactcacacacaggtactggta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cacacaaatctgtaaactcacatactcctacctacactgactcacacacaggtactggta 622
Query: 423 tacacatactcacacacaagtaaatctgtaaacactctttcacacactgatacatacaca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tacacatactcacacacaagtaaatctgtaaacactctttcacacactgatacatacaca 682
Query: 483 tctacacagcacacatacaaaccaatacaaccacacacagctcactagatacaataaagt 542
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 683 tctacacagcacacatacaaaccaatacaatcacacacagctcactagatacaataaagt 742
Query: 543 cgtagagggcaccagtccacagaataattgggcctgttctgacatggactgaaggactcg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cgtagagggcaccagtccacagaataattgggcctgttctgacatggactgaaggactcg 802
Query: 603 aaggctctgacttaggtgggctgtggagactggcttttagaaatcaaaacctctaggatg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaggctctgacttaggtgggctgtggagactggcttttagaaatcaaaacctctaggatg 862
Query: 663 ctt 665
|||
Sbjct: 863 ctt 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_d04.g1 MSMg01no158_d04.g1 CHROMAT_FILE:
MSMg01no158_d04.g1 PHD_FILE: MSMg01no158_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:41 2005
(290 letters)
>mm_chr17_14433149_14433839
Length = 691
Score = 532 bits (275), Expect = e-155
Identities = 287/291 (98%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 1 aaaacatagcaaggaaaagacacgaagattccatctcaggttatttgcttcaaagacaag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaaatatagcaaggaaaagacacgaagattccatctcaggttatttgcttcaaagacaag 432
Query: 61 ttcaaacttctaaattgccctacgtgctgtttctaaagatcctttgtatgtttccaagta 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 ttcaaacttctaaattgccctacgtgctgtttctaaagatcccttgtatgtttccaagta 372
Query: 121 gctccctggcatttctagcaagacaggggagctactctgagcctgcttgtctctgtaggc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 371 gctccctggcatttctagcaagacaggggagctactctgagcctgcttgtctctataggc 312
Query: 181 acccacaaccccaaggtatgtggagccttcccatccatgattggaaaccatctaaatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acccacaaccccaaggtatgtggagccttcccatccatgattggaaaccatctaaatcaa 252
Query: 241 agccactacacagtgaggctgctacc-ttttttttttttttttacattttc 290
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 251 agccactacacagtgaggctgctacctttttttttttttttttacattttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
