BAC Information

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BAC

Clone NameMSMg01-158I22
Chromosome17 (Build37)
Map Location 26,514,205 - 26,514,494
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
Downstream geneEG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158I22.T7 (MSMg01no158_i22.b1)MSMg01-158I22.TJ (MSMg01no158_i22.g1)
ACCAG358741AG358742
length694696
length of high quality
(start - end)
314 (36 - 349)292 (67 - 358)
definitionCHROMAT_FILE: MSMg01no158_i22.b1 PHD_FILE: MSMg01no158_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:06 2005CHROMAT_FILE: MSMg01no158_i22.g1 PHD_FILE: MSMg01no158_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAT
AAGGAGACTGGGTGAACACAGTCACTTTCCAGAGGTCAGGGGTCAGGTAG
CTGCCGGTCTTGGACGTGGCATAAAAAGCGGCCTTGGCAAAGTTGCTCAG
GATGGCAGTGCAGCCTCTGGCTGAAGTGTAGTAGTCATCTATACCGGCCA
TCATCAGTAGCTTCTTGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGG
GGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTGTCACCTTG
CATGGAACAGTGTGGTTTTTGCCAATCTTGTTCCCCCAGTAGCCTCTCCG
CTTAGGGTCCCCCGAAAGCTTGGNNCCGATGATGGCCCCTCGGATGGNAG
TGGCAACCTCCCCGAAGCNCTAACNCAAAGATCAACGTGACCATCGTAGT
CCCCAATAACGACGAATGCCTTGAACCTGGTCCACTGGCCAGCCCGAGTC
TGTTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGCACC
CAGGAAAAAGTCAGTGATCTCAGACTCCTTAATAGGCAGGGAGAACAGGT
AGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCCCAGC
TTGCTGACCGGGATCCACTGAAGGAAGAAGACACCAATCAAAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAGAGGAGGTGACTAGGACCTGGTCTCAAGGGG
AGAAGCAGGCATAAAGGATTTCCTTCTGTCCAGGACTCAGAGAGAGGATG
GCAGCATGGGCCAGTGACACTCTTAAAGCTCTGCCGGACCCTGGACACCA
GGAGATAAAATTAGGAGAGAGTCACAGGCTCTTCTAATCTGTTTCCCTGT
CTGGATATTAATGCTCCCTTCATAAGCCAAGTACAATCAGGGACACTTGG
TGTTGCACAGGCCTGACTCAGGTCCCTCAGCATGAGAAGGACCCACCCAG
CTCCTGTATTCTTCTCCCCCCCCCTCCTCTTAGTATCTCGAACTGCACTG
TCTCTAAGATTCCCCGCAACAAAAACCAGCAGGCTCCAACTGGATGGCCT
TAGCTTCACCCACAGGCTCCATGACAACCTGCTTGCCTGCTGGGGAAATG
CTGGTACCTGTAAGTTCCCCCCAAAGTGGCTCACCAAAGATTCCCAGGCT
AGCCTGAAGTATGAGATTGTATTAGAAGCACCGAGAAGTCTGGGGTGAGG
AGCCCTCAAGGCAATGTGGAGTAGTGCCAAGGTCCACCCCAAACTGCGAG
GATTCATTAGATTTTCCTATACCTCCGGAAATTGCATGACAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_i22.g1 MSMg01no158_i22.g1 CHROMAT_FILE:
MSMg01no158_i22.g1 PHD_FILE: MSMg01no158_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:06 2005
         (292 letters)



>mm_chr17_26514005_26514696
          Length = 692

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaggaggtgactaggacctggtctcaaggggagaagcaggcataaaggatttccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaggaggtgactaggacctggtctcaaggggagaagcaggcataaaggatttccttc 260

                                                                       
Query: 61  tgtccaggactcagagagaggatggcagcatgggccagtgacactcttaaagctctgccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtccaggactcagagagaggatggcagcatgggccagtgacactcttaaagctctgccg 320

                                                                       
Query: 121 gaccctggacaccaggagataaaattaggagagagtcacaggctcttctaatctgtttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccctggacaccaggagataaaattaggagagagtcacaggctcttctaatctgtttcc 380

                                                                       
Query: 181 ctgtctggatattaatgctcccttcataagccaagtacaatcagggacacttggtgttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtctggatattaatgctcccttcataagccaagtacaatcagggacacttggtgttgc 440

                                                             
Query: 241 acaggcctgactcaggtccctcagcatgagaaggacccacccagctcctg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaggcctgactcaggtccctcagcatgagaaggacccacccagctcctg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)