BAC Information

Click to search

BAC

Clone NameMSMg01-159L11
Chromosome17 (Build37)
Map Location 49,251,391 - 49,251,676
singlet/doubletsinglet
Overlap gene1700008K24Rik
Upstream gene9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2
Downstream geneLOC672972, Mocs1, Daam2, Kif6, EG668470, Rftn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159L11.T7 (MSMg01no159_l11.b1)MSMg01-159L11.TJ (MSMg01no159_l11.g1)
ACCAG359579AG359580
length740746
length of high quality
(start - end)
314 (45 - 358)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no159_l11.b1 PHD_FILE: MSMg01no159_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:29 2005CHROMAT_FILE: MSMg01no159_l11.g1 PHD_FILE: MSMg01no159_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCAAAGTAAGACTTTCAGTTTTAAAATTCAGGAGAGGGCAGAGTC
ACTGGGTGGCACAGAAATTCTGCCCCGGAACCAGGGCCTGAGAGCAGTGT
TAGTTGCTCACGAGTCGGGAAGTGATTCAAGGGAGAAAGAGGTGGTGGTG
GCTCGTGGTTTGAGGGGATTACAGTCCACTGTGGTGGGGAAGGCATGATG
GCGGGAAGGTGAGGCAGCTGGTCAGAGGGAGATGAAGGCTAGTACTCAGA
TCTCCCCTTTTTATATTAGATATTTTTTTTATTTACATTTCAAATGCTAT
CCTGAAAGTTCCCTTTACCCCNNNCCCGNNCCGCTGCCCTATCCACCCAC
TCCCACTTCTTGGCCCTGGCATTAAAAAAAAAAGAGGCATATAGTGTTTG
CCTCTCTTCCCAATGATGGCTGACTAGGCCATCTTCTGCTACATATGCAG
CTAGAGACCCGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCTAC
CTATAGGGGTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCT
CTATTGGGGGCCCTGTGTTTCATCCTATAGCTGACTGTGACCATTCAGCT
CCCTTTTTATTCACTTTGGGACAACCCCCCATGAAAGGGTGTCCCCTATC
TTGCTGGCACCGGCTCTTTTCACTTAATATTTATCTTCTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGGAGCCTGGCCAGCCACCCAGGCCTT
TATAAAGGTCCTCGTACCACAGGATGTATGGGAGACCCAATAAAGACTTT
GCAAAATGCTTTACTGCTTTGAGCTGCTTAGGGTATCTACCGAGAAGGAT
TGTATTTCTATTCCTACACAAACTGGGCCGAGAGGATGTCCTTGGCCCTT
CCAAGTCCCTTTGAATGAGACTTGTGTTCGGTAGAGATGTGAGCCTGGCT
GGCATACTGGACATCTGGCCTGGTTTTCTCTGCACATTTAATTTGTGGTG
GGGGAAGTATTTTTGACCGCCCCCTCTTCACCAGAATAGTCAGATGGTTG
AACAGTGTAGGAGGGTAGAAACAGAGATTCATGTGGAAGTTCTGTAATTT
CACAAGTTATATATATGTGTGTGCATAACTTTATTCTTCTAGTCATTGAG
AGGGAGATGTACTAGGGAAGAGACTCCTAGTAGGAAGGTGGTGGTGGCCC
TATTATCGATGCTGTGAATACAGACTAATATCACGCTAGTCCTCTGAACA
TTTAACTTGAAGACACTATTACTCCTTATTGTTCTGTAAGATGTTCCTTC
CCCATCTTTGAAACTCATAAATTTTTACTACTTTTCCCCACTTATCCTTT
GTATATAAGTTAAATTGTATCTTCTCATTCATGCCTCGTCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_l11.g1 MSMg01no159_l11.g1 CHROMAT_FILE:
MSMg01no159_l11.g1 PHD_FILE: MSMg01no159_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:29 2005
         (285 letters)



>mm_chr17_49251191_49251876
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggagcctggccagccacccaggcctttataaaggtcctcgtaccacaggatgtatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agggagcctggccagccacccaggcctttataaaggtcctcgtaccacaggatgtatggg 427

                                                                       
Query: 61  agacccaataaagac-tttgcaaaatgctttactgctttgagctgcttagggtatctacc 119
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 426 agacccaataaagacttttgcaaaatgctttactgctttgagctgcttagggtatctact 367

                                                                       
Query: 120 gagaaggattgtatttctattcctacacaaactgggccgagaggatgtccttggcccttc 179
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gagaaggattttatttctattcctacacaaactgggccgagaggatgtccttggcccttc 307

                                                                       
Query: 180 caagtccctttgaatgagacttgtgttcggtagagatgtgagcctggctggcatactgga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 caagtccctttgaatgagacttgtgttcggtagagatgtgagcctggctggcatactgga 247

                                                         
Query: 240 catctggcctggttttctctgcacatttaatttgtggtgggggaag 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 catctggcctggttttctctgcacatttaatttgtggtgggggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)