BAC Information

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BAC

Clone NameMSMg01-159M21
Chromosome17 (Build37)
Map Location 22,475,321 - 22,475,762
singlet/doubletsinglet
Overlap gene6330416L07Rik
Upstream geneA830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624
Downstream geneZfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159M21.T7 (MSMg01no159_m21.b1)MSMg01-159M21.TJ (MSMg01no159_m21.g1)
ACCAG359645AG359646
length731735
length of high quality
(start - end)
324 (50 - 373)623 (79 - 701)
definitionCHROMAT_FILE: MSMg01no159_m21.b1 PHD_FILE: MSMg01no159_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:35 2005CHROMAT_FILE: MSMg01no159_m21.g1 PHD_FILE: MSMg01no159_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:35 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGATGTTTTCTAAGATCACCTTTGTGGGAAAAGCATTTG
TCACATTCACTACATTTGTAAGGCTTCTCTCCTGTATGAACTCTCTGATG
AGCATTAAGACTGCTTTTGTAGGTAAAACACTTTTCACATTCACTACATT
TGTAAGGCTTCTCACCTGCATGAATTCTCTGATGACTCCTAAGCCTGGCT
TTCAGCATAAAAGATTTGTCACATTCACTGCATTTGTAAGGTCGATTTCC
TGAATGTATTCTCTGATGCGTTCTAAGACAATATTTGTCAGTAAAGCATT
TGTCACACTCACTGCATTTGTAGGGTTTTTCTTCTGCATGAACTCTCTGA
TGAATAATAAAACTGCATTTTCGACCAAAGAATTTGTCACATTCACTGCA
CTTATAAGGTTTCTCTCCTGTATGAATTAGCAGATGAATACTAAGATTGC
CTTGCTGAGTAAAAGACTTGTTATATTCGCTGCATTTGTAAGGTTTCTCT
CCTGAATGTATTCTCTGATGAATTCCAATACTGCATTTCTTTGTAAAGCA
TTTGTCACATTCACTACATCTGTAAAGTTTTTCTCCTGTATGAATTCTCT
GATGAATACTAAGATCACTTTTGAGAATAAAGCATTTGTCACATTCACTA
CATTTGTAAACTTTCTTTTCTGTATGAATTA
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATATAGGAGATAAGCCTTATAA
ATGCAGTGAATGTGGCAAATGTGTTGTTAACAAATACAGTCTTAGTATTC
ATTAGAGAATTCATACAGAAGAGAAACCTTATACATGTAATGAATGTGAT
GAATTCTTTAGACATAAATGTAGTCTTAGCACTCATCTGAAAATGTACAC
ATTAGAGAATTTTTACAAATGAAGCAAATGAGACAAACCCTTCACCAAGA
AAGATCATCTTAGAAGTCATCAAAGAATACATACAGGAGAGTGACCTTTC
AATGTTCATGTTCAAATCCTTTATTCTTACCTTATCTCATAGTACATCAG
AGAATTTGTATAGGAGAGAAACCTCACAAATGTAACACAAGGAAAGAGCT
TTACCTGAAAAATAGTTTCTTCCGGAAAACATGTGGCATATGTTTTACCC
AAGCGGAATTCTTTACAACACTTGACGCTCCACACTAGAGTTAATTATGA
ATATTAGGAACTTGTGAAAGCATTTTAGTGTTTAAATCTTAGAAACTATG
AAGCATGTATGCTGGAGAATCTCTGAAAATGTGACAATGGAGAAAAATTT
TCAAATTGTTCACTAGCAAATATTCCATAATAAAGACAAAGTAGAGAAGC
CAGAAGAATCTGTAACACTTCTATGGAGACTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_m21.g1 MSMg01no159_m21.g1 CHROMAT_FILE:
MSMg01no159_m21.g1 PHD_FILE: MSMg01no159_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:35 2005
         (623 letters)



>mm_chr17_22474737_22475762
          Length = 1026

 Score =  431 bits (223), Expect = e-125
 Identities = 388/447 (86%), Gaps = 13/447 (2%)
 Strand = Plus / Minus

                                                                        
Query: 185  ttacaaatgaagcaaatgagacaaacccttcaccaagaaagatcatcttagaagtcatca 244
            ||||||||||| ||||||| ||||||||||||  || ||||||||| ||| || ||||||
Sbjct: 1026 ttacaaatgaaacaaatgacacaaacccttca--aa-aaagatcatgttaaaactcatca 970

                                                                        
Query: 245  aagaatacatacaggagagtgacctttc-aatgttcatgttcaaatcctttattcttacc 303
            || |||| ||||||||||||| |||||| ||| |  ||||| |||||||||| | ||| |
Sbjct: 969  aacaatatatacaggagagtgtcctttcaaatataaatgtttaaatcctttactgttagc 910

                                                                        
Query: 304  ttatctc--atagtacatcagagaatttgtata--ggagagaaacctcacaaatgtaaca 359
            | |||||  | ||||||||||||||||   |||  |||||||||||||||||||||||||
Sbjct: 909  tcatctctgacagtacatcagagaatt--catacgggagagaaacctcacaaatgtaaca 852

                                                                        
Query: 360  caaggaaagagctttacctgaaaaatagtttcttccggaaaacatgtggcatatgtttta 419
              |||||||||||||||||||||| |||||||| | |||||||||||||||| | |||||
Sbjct: 851  tgaggaaagagctttacctgaaaagtagtttctgctggaaaacatgtggcatgtatttta 792

                                                                        
Query: 420  cccaagcggaattctttacaacacttgacgctccacactagagttaattatgaatattag 479
            |||||| |||||||||| |||||||| | |||||||||||||||||||||||||||||| 
Sbjct: 791  cccaagtggaattctttgcaacactttaggctccacactagagttaattatgaatattaa 732

                                                                        
Query: 480  gaacttgtgaaagcattt---tagtgtttaaatcttagaaactatgaagcatgtatgctg 536
            || ||||||||||||  |   ||||||| ||||| |||||||||| |||||| |||||||
Sbjct: 731  gatcttgtgaaagcacctaagtagtgttcaaatcatagaaactataaagcatttatgctg 672

                                                                        
Query: 537  gagaatctctgaaaatgtgacaatggagaaaaattttcaaattgttcactagcaaatatt 596
            ||||||  ||||||||||||||||| ||||||||||||||| |||| |||| ||||| ||
Sbjct: 671  gagaatgactgaaaatgtgacaatgaagaaaaattttcaaaatgtttactatcaaatgtt 612

                                       
Query: 597  ccataataaagacaaagtagagaagcc 623
            ||||||| ||||||||| |||||||||
Sbjct: 611  ccataatgaagacaaagaagagaagcc 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1026
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1016
Effective search space:   622808
Effective search space used:   622808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)