BAC Information

Click to search

BAC

Clone NameMSMg01-160F10
Chromosome17 (Build37)
Map Location 36,000,754 - 36,001,059
singlet/doubletsinglet
Overlap geneNrm
Upstream geneC2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1
Downstream gene2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160F10.T7 (MSMg01no160_f10.b1)MSMg01-160F10.TJ (MSMg01no160_f10.g1)
ACCAG360038AG360039
length727807
length of high quality
(start - end)		310 (49 - 358)174 (73 - 246)
definitionCHROMAT_FILE: MSMg01no160_f10.b1 PHD_FILE: MSMg01no160_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:16 2005CHROMAT_FILE: MSMg01no160_f10.g1 PHD_FILE: MSMg01no160_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCCCCGGTTCTTATCCTACAACCTCCCTAGGCCTCACAATA
GCACTTGTCTTCCAGTTGGTATTCTCATGGATGTTTGGCATAGGCTAGTT
GAGTGATTATTATCCACCAGCCCCCATCCCGTCCAGTCTCCAAAAAATCC
TGTGTAGGGATGGGCCATCTTCATGTCCTTGGTACCCCTCCCAGAACCCT
CCACATGGTAAATATTTACTGTTTATACCTGTCGGAAAGAGTCCTCGTAG
GTTATTGTGTGGCAAGGGAGACCACTGGTGTGCCCAGTCTCTCATCTTTC
CCCAGTTGTTGTTGCGCCCCCCGCCCCACTACACCCAGAGGCCCAGTGTT
ATGGGAGGCTCGGCCCCAACCATGAGACACCTGGGTACCTCTCCTCTGCT
TTGTGCTCCACGTTGTTTCCTGGCTCCTCATCTTTAGCATCCTTCTGGTC
TTTGACTACGCTGAACTGATGGGCCTCAAGCAGGTGAGAATCCCACACCC
CTACGTGAGACCTGCGTCTGCAAGTCTCTCCCTCCTGAACTCTTCTGAAT
TCTCTCGGCTTTGTAGTGCCTCTGATTTCCTCCAGCTTTGCCTTTATGGT
TTGTGACTGTCCTTTTTCTTGGATTTTGATTCCCTATTCTGTTATTCTTA
TTAACTCTCTTTTAATTAGAGTTAGCG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCACCCTAGCAAGCAGTCCCAGATGTG
GTAGAAATGACTAAGTGAACTTGGCAGAGAGATGACAAGATTCAAGCTCT
TGCTGGGCATGGTGGCGCACATCTTTAACCCCAGCACTCGGGAGGCACAG
GCAGGCGGAGGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGA
CAGCCAGTGCTACACAGAGAAACCCTGTCTTGAAAAACCACTCACACACT
CTAAAGACTCAAGCTCTTGCGTGGTATTGTAATGCCCTGGGTCCCCAGGA
AATCCAGATGTTTCTAACCCCCCCCCCCCCCACTGTATCTCGCAAAAGAG
TCTTTTATTTCCCCCTTTGTACATAAAAACACCATGTAGCATGAGGGAAG
TTATTTCTTCTCTTAACACCTCTCTCCTCCGTCTTCACATAACACAATTT
ATTATTTACAATATTACATCCCATAACATTGACCCATCAAATTAATATAC
ACTTTCATCTTTCTACTCTTAATCACTATTGTTGATATATTTTTTATTCC
TCCATTTCACATAACATCAAATATTCGCCTCGACATATTATACTTCATTT
TATTTAATCCATAAATAACTTACTTACAGGCCATTACTTTATCATATTCT
CTACTGTTTCTTTTGATTCACACCTCTCTACTTATTTATCTATTCATATA
CTATTATTATATGTACTTCACACACTAATATTATCAATCTCTTATATTCT
ACTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_f10.b1 MSMg01no160_f10.b1 CHROMAT_FILE:
MSMg01no160_f10.b1 PHD_FILE: MSMg01no160_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:16 2005
         (310 letters)



>mm_chr17_36000550_36001259
          Length = 710

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctccccggttcttatcctacaacctccctaggcctcacaatagcacttgtcttc 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcccgggttcttatcctacaacctccctaggcctcacaatagcacttgtcttc 264

                                                                       
Query: 65  cagttggtattctcatggatgtttggcataggctagttgagtgattattatccaccagcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagttggtattctcatggatgtttggcataggctagttgagtgattattatccaccagcc 324

                                                                       
Query: 125 cccatcccgtccagtctccaaaaaatcctgtgtagggatgggccatcttcatgtccttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccatcccgtccagtctccaaaaaatcctgtgtagggatgggccatcttcatgtccttgg 384

                                                                       
Query: 185 tacccctcccagaaccctccacatggtaaatatttactgtttatacctgtcggaaagagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacccctcccagaaccctccacatggtaaatatttactgtttatacctgtcggaaagagt 444

                                                                       
Query: 245 cctcgtaggttattgtgtggcaagggagaccactggtgtgcccagtctctcatctttccc 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcgtaggttattgtggggcaagggagaccactggtgtgcccagtctctcatctttccc 504

                 
Query: 305 cagttg 310
           ||||||
Sbjct: 505 cagttg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |