Query= MSMg01no165_k13.b1 MSMg01no165_k13.b1 CHROMAT_FILE:
MSMg01no165_k13.b1 PHD_FILE: MSMg01no165_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:54 2005
(695 letters)
>mm_chr17_62506681_62507775
Length = 1095
Score = 1218 bits (630), Expect = 0.0
Identities = 678/694 (97%), Gaps = 4/694 (0%)
Strand = Plus / Plus
Query: 4 gaattcatggttactt-acaggtcctctgcacaacatcagagaatttgtagtaagtctgc 62
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatggttactgga-aggtcctctgcacaacatcagagaatttgtagtaagtctgc 262
Query: 63 tacaatcctataatctacaacagtcacccatctgcattatatgctggaatgataggggat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tacaatcctataatctacaacagtcacccatctgcattatatgctggaatgataggggat 322
Query: 123 ctaatattgtgggagtatccaagcacttcctgatttggtataaagcccactccatgagat 182
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 323 ctaatattgtgggagtatccaagcacttcctcatttggtataaagcccactccatgagat 382
Query: 183 ggaacccacaactgacactgctcagatccccaagaacatgagactagaaggcctataggc 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 ggaacccacaactgacactgctcagatccccaagaacgtgagactagaaggcctataggc 442
Query: 243 ttagaggaaccccaaacactagtgttctgctaaagctgcttaacaataaaatgaatccta 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 ttagaggaaccccaaacactagtgttctgctaaagctgcataacaataaaatgaatccta 502
Query: 303 aggtattctgctataaccatagacccgcaccttgctcagccatcaccagagaagcttcct 362
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 aggtattctgctataaccatagacccgcaccttgctcagccatcatcagagaagcttcct 562
Query: 363 cttgaagtacacggatggaaactgacatacagatacacaactggatgctgttcaaaaagt 422
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttgaagtagatggatggaaactgacatacagatacacaactggatgctgttcaaaaagt 622
Query: 423 gagagacatcagaacactccatcctaagggagagaaattggggataaggacttcatgatc 482
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 623 gagagacatcagaacactccgtcctaagtgagagaaattggggataaggacttcatgatc 682
Query: 483 agaatatattcaaaattcaataaaggtatataaatatccatatgatttg-tccatatata 541
||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 683 agaatatattcaaaattcaataaaggtgtataaatatccatatg-tttcatccatatata 741
Query: 542 tggatatatactagttttaaattataaacttgtgtgaaacatacttatggtgagatggaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tggatatatactagttttaaattataaacttgtgtgaaacatacttatggtgagatggaa 801
Query: 602 atttctcctacagagtttcctgatagagactaatgtaagtaaatacacagcagttctggg 661
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 802 atttctcctacagagtttcctgatagagactaatgtaagtaaatacacagaagttctggg 861
Query: 662 ttatttattcagtgaacaaactgctgatactgaa 695
||||||||||||||||||||||||||||||||||
Sbjct: 862 ttatttattcagtgaacaaactgctgatactgaa 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_k13.g1 MSMg01no165_k13.g1 CHROMAT_FILE:
MSMg01no165_k13.g1 PHD_FILE: MSMg01no165_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:54 2005
(617 letters)
>mm_chr17_62689435_62690451
Length = 1017
Score = 1149 bits (594), Expect = 0.0
Identities = 611/622 (98%), Gaps = 10/622 (1%)
Strand = Plus / Minus
Query: 1 acgtcacaaaggcaaaggggtggagaggttgagctatatttagcggtgatcggcggtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 acgtcacaaaggcaaaggggtggagaggttgagctatatttagcggtgatcggcggtgtt 758
Query: 61 tgaatctacagacttctagagtagactagcttagaaataatgagaagtggctgctgttgt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 757 tgaatctacagacttctagagtagactagcttaaaaataatgagaagtggctgctgttgt 698
Query: 121 agagaggattctgtctcttgggcacacatagtaggtccatactttgtttcctccttgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agagaggattctgtctcttgggcacacatagtaggtccatactttgtttcctccttgatt 638
Query: 181 cctgtagaatcaggacttagctaatgaattctgagtggaagcaatggttagtacatcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cctgtagaatcaggacttagctaatgaattctgagtggaagcaatggttagtacatcttt 578
Query: 241 gctcatcccagctgctgcggtgggcgctcttgcagtctgcggtgaaggtcttagcatggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gctcatcccagctgctgcggtgggcgctcttgcagtctgcggtgaaggtcttagcatggc 518
Query: 301 tgactgcagtcagcctagcagctgtacaggcttgaagttca-----cccccgatctattt 355
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 517 tgactgcagtcagcctagcagctgtacaggcttgaagttcagtttt-----gatctattt 463
Query: 356 tcaaaagatggtcttcaatttggattttctactttttaaaatttgtatgaattactagtg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcaaaagatggtcttcaatttggattttctactttttaaaatttgtatgaattactagtg 403
Query: 416 aacagctaaagccagctaaagccagcacaagtgtgcccaattcaataactaaaatgctca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aacagctaaagccagctaaagccagcacaagtgtgcccaattcaataactaaaatgctca 343
Query: 476 gatttcttgagcatcctgctatgactttctgtaagtggaaggcatttttaaaacgtaaga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gatttcttgagcatcctgctatgactttctgtaagtggaaggcatttttaaaacgtaaga 283
Query: 536 ttcctcttgaatgtaatggattttataaatttgctaaatgtatagatcttgaggctcctt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttcctcttgaatgtaatggattttataaatttgctaaatgtatagatcttgaggctcctt 223
Query: 596 ccccctacatttatggctttta 617
||||||||||||||||||||||
Sbjct: 222 ccccctacatttatggctttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
