This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-166E18
Chromosome
17 (Build37)
Map Location
73,228,563 - 73,328,685
singlet/doublet
doublet
Overlap gene
Lbh
Upstream gene
Alk
,
Ypel5
Downstream gene
Lycat
,
LOC668709
,
Capn13
,
LOC100043666
,
Galnt14
,
Ehd3
,
LOC240160
,
Xdh
Link
Open Mouse BAC browser
Click to get alignment info.
name
Alk
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:11682
MGI:103305
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ypel5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:383295
MGI:1916937
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lbh
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:77889
MGI:1925139
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lycat
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:225010
MGI:2684937
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668709
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668709
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Capn13
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:381122
MGI:2685789
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100043666
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043666
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
name
Galnt14
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:71685
MGI:1918935
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ehd3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:57440
MGI:1928900
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC240160
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:240160
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins
pseudo
: _no_value
name
Xdh
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22436
MGI:98973
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Alk
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:110347474
GeneID:11682
MGI:103305
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: anaplastic lymphoma kinase
transcript_id
: NM_007439.2
name
Ypel5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142349613
GeneID:383295
MGI:1916937
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: yippee-like 5 (Drosophila)
transcript_id
: NM_027166.4
name
Lbh
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:34328473
GeneID:77889
MGI:1925139
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: limb-bud and heart
transcript_id
: NM_029999.3
name
Lycat
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124486721
GeneID:225010
MGI:2684937
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: lysocardiolipin acyltransferase
transcript_id
: NM_001081071.1
name
Capn13
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802275
GeneID:381122
MGI:2685789
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: calpain 13
transcript_id
: NM_001033444.2
name
LOC100043666
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268806
GeneID:100043666
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
product
: similar to Ubtf protein
transcript_id
: XM_001480646.1
name
Galnt14
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:58000404
GeneID:71685
MGI:1918935
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14
transcript_id
: NM_027864.1
name
Ehd3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802831
GeneID:57440
MGI:1928900
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: EH-domain containing 3
transcript_id
: NM_020578.2
name
Xdh
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:77682554
GeneID:22436
MGI:98973
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: xanthine dehydrogenase
transcript_id
: NM_011723.2
name
Alk
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110347475
GeneID:11682
MGI:103305
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence ISS] [Evidence IEA]
GO_process
: GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA]
codon_start
: 1
product
: anaplastic lymphoma kinase
protein_id
: NP_031465.2
name
Ypel5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:47059139
CCDS:CCDS28963.1
GeneID:383295
MGI:1916937
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: yippee-like 5
product
: yippee protein homolog
protein_id
: NP_081442.1
name
Lbh
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34328474
CCDS:CCDS28964.1
GeneID:77889
MGI:1925139
definition
GO_component
: GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0016563 - transcriptional activator activity [Evidence IDA]
GO_process
: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]
codon_start
: 1
product
: limb-bud and heart
protein_id
: NP_084275.3
name
Lycat
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124486722
GeneID:225010
MGI:2684937
definition
GO_component
: GO:0005783 - endoplasmic reticulum [Evidence IDA]
GO_function
: GO:0008415 - acyltransferase activity [Evidence IDA] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0008152 - metabolism [Evidence IEA]
codon_start
: 1
note
: acyl-CoA:lysocardiolipin acyltransferase 1
product
: lysocardiolipin acyltransferase
protein_id
: NP_001074540.1
name
Capn13
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85701961
GeneID:381122
MGI:2685789
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004198 - calpain activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
GO_process
: GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
product
: calpain 13
protein_id
: NP_001028616.1
name
LOC100043666
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149268807
GeneID:100043666
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001480696.1
name
Galnt14
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:58000405
CCDS:CCDS28965.1
GeneID:71685
MGI:1918935
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004653 - polypeptide N-acetylgalactosaminyltransferase activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14
protein_id
: NP_082140.1
name
Ehd3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:10181214
CCDS:CCDS28966.1
GeneID:57440
MGI:1928900
definition
GO_component
: GO:0030139 - endocytic vesicle [Evidence IDA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]
codon_start
: 1
exception
: mismatches in translation
note
: EH-domain containing protein 2
product
: EH-domain containing 3
protein_id
: NP_065603.1
name
Xdh
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:77682555
CCDS:CCDS28967.1
GeneID:22436
MGI:98973
definition
GO_component
: GO:0005777 - peroxisome [Evidence IEA]
GO_function
: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron carrier activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IDA]; GO:0004855 - xanthine oxidase activity [Evidence IEA]
GO_process
: GO:0006118 - electron transport [Evidence IEA]; GO:0007595 - lactation [Evidence IMP]; GO:0030856 - regulation of epithelial cell differentiation [Evidence IMP]
codon_start
: 1
note
: xanthine oxidase
product
: xanthine dehydrogenase
protein_id
: NP_035853.2
name
LOC668709
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668709
definition
number
: 2
pseudo
: _no_value
name
LOC668709
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668709
definition
number
: 1
pseudo
: _no_value
name
LOC240160
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149268907
GeneID:240160
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins
product
: similar to glycoprotein, synaptic 2
pseudo
: _no_value
transcript_id
: XR_035036.1
clone name
MSMg01-423K19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-214F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424E07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118D17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-121J05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-154C13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-140D24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-183E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-185L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-169D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-152D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460H22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-454B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-179O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-472L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-445D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-432M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-274N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322H03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-341K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-170F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275C13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351D14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-442G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505I24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-113O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-115K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-169O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-180E16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-094D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-392B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-202H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-376C13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-392M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-386N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-232J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-170F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-272M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-172I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376L06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479J06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-269A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118O01
singlet/doublet
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