BAC Information

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BAC

Clone NameMSMg01-166N05
Chromosome17 (Build37)
Map Location 57,600,548 - 57,600,864
singlet/doubletsinglet
Overlap geneEmr1
Upstream genePtprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1
Downstream geneEG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166N05.T7 (MSMg01no166_n05.b1)MSMg01-166N05.TJ (MSMg01no166_n05.g1)
ACCAG364529AG364530
length741755
length of high quality
(start - end)		320 (47 - 366)341 (76 - 416)
definitionCHROMAT_FILE: MSMg01no166_n05.b1 PHD_FILE: MSMg01no166_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:26 2005CHROMAT_FILE: MSMg01no166_n05.g1 PHD_FILE: MSMg01no166_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGGATAGGTCAGGCATGGAGAGAGATTTGCCCTGAACTCTGAG
GAGACAGACACATGAAACTGAGGAAAGGTAAGCAACCATGTGGCAGAACT
TAGACTAGATTAAATGGGATAATTGAGTTACAAACTAGCAGGAACCAGCC
AAAACTTGCCTAGGCATTTATTCATATACAATAAGTCTCATAGCTATAAT
TTCCGGAACTCAGGTGTGAGTGGAAAAGCCCACAGTTACACCTGTCAGTT
TCTTCCAGGTCTAGATATTGAATGGAAGAGAAAGAAAAAAAATAACTATG
TTTAGTATGTGCAAGTTTAGAGATATCCGCCCCCCCGAGGCTAATTTGGT
CTAGATAACAAATTAAGCCCCCCACCAGCTAGGCTACATTACTATGTAGA
AAGATTCTGTATATAAAAGAAAAGAAGGATGTAAAGGAAGGTAGAAAAGG
AAGAAACAGAGGAGATATGATCACGATTAGAAGAGAGATGAGAAATTCTG
AGAAATAAGCAGAAGCCAAGTGACATTTGAAGATACCGGGCACTGTTTTG
GCTTTATTTCTATTGCTGCAATAACAAGGGATTTATTCAAGTTTATAGGC
CTATCCTGGCTAGTTTTACCTCCACTTGACACGAGCGAGAATATTCTAAT
AAGAGGAAACCCCCACTTGAGAAAATGCTTCCCTAATATCN

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAAATCAACAGAGTCAACT
AATCTGGAAGCTTGAGGTTCTCAGAGTCTGAACTACCACCAAAGAATATG
CCTTAGGCCTCCCCACACATAGGTAGCAGATGTACACCCACTTCATCTGT
CTCCTAAACAATTGAAACAAGGCTTACTCCAAAAGCTGTTATTTGTATGT
GGGATCTGTGCTTGTATGTGCTTCTGGCTGGGCTGTCTTGTCTGGCCTCA
ATGAGAGAGGAAGCACCTAGCCTTACAGAGACTTGAAAAGCCAGGGTGTG
GGGATACCGAGGGGTTCCTCACCTGCTCAGAGAAAAAAAGGAAGGAGGGT
GAGGGAAGAATTGGGGCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTNNTTTTTTTTTTCCTCTTTTTTTTTTTTCTCTTTCTCCCTCTCC
CCTTCTTTTTTTTCGTTTTCTCCCTTCCCTCCCCTTTCTTTCCTTTTTCT
TCTCTCCTCCCCTTCTTCTTTCTCCTCCTTCTTTTTTTCTCCTCTTTTTT
TTTCCCTCTTCCCCTCCCTCCTTTTGTTGCNTTCTTCCTTTCTTTCCTCC
TTGCTCTGTTCCGTCCTCTCCCCTCCCCCCCTTCTTTTGCTGCCCCTTCC
CTTCTTTTTTCTCCCGTTCTTTCCTTTCTCTTTTNTTCTCTCCCCTTACC
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_n05.b1 MSMg01no166_n05.b1 CHROMAT_FILE:
MSMg01no166_n05.b1 PHD_FILE: MSMg01no166_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:26 2005
         (320 letters)



>mm_chr17_57600345_57601064
          Length = 720

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttggataggtcaggcatggagagagatttgccctgaactctgaggagacagac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttggataggtcaggcatggagagagatttgccctgaactctgaggagacagac 263

                                                                       
Query: 64  acatgaaactgaggaaaggtaagcaaccatgtggcagaacttagactagattaaatggga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acatgaaactgaggaaaggtaagcaaccatgtggcagaacttagactagattaaatggga 323

                                                                       
Query: 124 taattgagttacaaactagcaggaaccagccaaaacttgcctaggcatttattcatatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taattgagttacaaactagcaggaaccagccaaaacttgcctaggcatttattcatatac 383

                                                                       
Query: 184 aataagtctcatagctataatttccggaactcaggtgtgagtggaaaagcccacagttac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataagtctcatagctataatttccggaactcaggtgtgagtggaaaagcccacagttac 443

                                                                       
Query: 244 acctgtcagtttcttccaggtctagatattgaatggaagagaaagaaaaaaaataactat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acctgtcagtttcttccaggtctagatattgaatggaagagaaagaaaaaaaataactat 503

                            
Query: 304 gtttagtatgtgcaagt 320
           ||||||||| |||||||
Sbjct: 504 gtttagtatatgcaagt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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