Query= MSMg01no167_p09.b1 MSMg01no167_p09.b1 CHROMAT_FILE:
MSMg01no167_p09.b1 PHD_FILE: MSMg01no167_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:51 2005
(422 letters)
>mm_chr17_81718667_81719488
Length = 822
Score = 762 bits (394), Expect = 0.0
Identities = 409/414 (98%)
Strand = Plus / Plus
Query: 9 gaattctctctacctgtctccttctcacaggaacagtttacttggcatgccagaattctc 68
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctctctagatgtctccttctcacaggaacagtttacttggcatgccagaattctc 268
Query: 69 ggagatgttgggaatggagggctctacttttgtgtgacttccttgtaagaaatttaaatt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggagatgttgggaatggagggctctacttttgtgtgacttccttgtaagaaatttaaatt 328
Query: 129 tgccttgtgtcagctaatactctaaaataatacctccagtgaattttaaatataaattaa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgccttgtgtcagctaatactctaaaataatacctccagtgaattttaaatataaattaa 388
Query: 189 cacacaccacactttcatctctaacaacttcatctttgtacttacacattatttccatcg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cacacaccacactttcatctctaacaacttcatctttgtacttacacattatttccatcg 448
Query: 249 ttgaagatcagccagctggcaccttgtgtctcagttggctagagaaactgaataaagatg 308
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 449 ttgaagatcagccagctggcaccttgcgtctcagttggctagagaaactgaataaagatg 508
Query: 309 gaactgttccatttgctaaaaacaaatgatttattatctgaaattcaaatactttaatat 368
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gagctgttccatttgctaaaaacaaatgatttattatctgaaattcaaatactttaatat 568
Query: 369 gccctccaagaaattatctggtttggaaaaactgcagaaggaaggttaaaggag 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gctctccaagaaattatctggtttggaaaaactgcagaaggaaggttaaaggag 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_p09.g1 MSMg01no167_p09.g1 CHROMAT_FILE:
MSMg01no167_p09.g1 PHD_FILE: MSMg01no167_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:51 2005
(585 letters)
>mm_chr17_81903241_81904225
Length = 985
Score = 768 bits (397), Expect = 0.0
Identities = 460/509 (90%), Gaps = 44/509 (8%)
Strand = Plus / Minus
Query: 4 tccacccaccccatcctcataagctacattgagagagaggctgccagagacagcaaaagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tccacccaccccatcctcataagctacattgagagagaggctgccagagacagcaaaagg 406
Query: 64 ctttctcaagtggcagattggatgaatagtcccagcatcctcacccctgtggatacagga 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 405 ctttctcaagtggcagattggatgaatagtcctagcatcctcacccctgtggatacagga 346
Query: 124 tatgcctttggcctcaaagtgttctggagaaagcccaactcagagtctcagggtaggatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tatgcctttggcctcaaagtgttctggagaaagcccaactcagagtctcagggtaggatt 286
Query: 184 ttaggctcttctgcagacctctatgccagactgcccgaccaggtatcaggaagtgctgag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttaggctcttctgcagacctctatgccagactgcccgaccaggtatcaggaagtgctgag 226
Query: 244 tgacatgaaaagcaaaaatgaaacacataagcacacatacacacatacacacacacacac 303
|||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 225 tgacatgaaacgcaaaaatgaaacacataagcacaca----------cacacacacacac 176
Query: 304 acacacacacacacacacacacacaaacacacccacatcacataccccaatatgctacta 363
| | |||||||||||||||||||||||
Sbjct: 175 ata----------------------------------tcacataccccaatatgctacta 150
Query: 364 ggtgttgaaggtgaaacaactgaagagataaaggtcatttgcactcaccctggaactttt 423
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 149 ggtgttgaaggtgaaacaaccgaagatataaaggtcatttgcactcaccctggaactttt 90
Query: 424 gtcatatgctgtcacaggcatatgctatggccttggtcagtgaccctcagttttaaaaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gtcatatgctgtcacaggcatatgctatggccttggtcagtgaccctcagttttaaaaca 30
Query: 484 tattaagaaggtaagcagttactttgaaa 512
|||||||||||||||||||||||||||||
Sbjct: 29 tattaagaaggtaagcagttactttgaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
