BAC Information

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BAC

Clone NameMSMg01-169J16
Chromosome17 (Build37)
Map Location 12,174,544 - 12,174,853
singlet/doubletsinglet
Overlap genePark2
Upstream genenone
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169J16.T7 (MSMg01no169_j16.b1)MSMg01-169J16.TJ (MSMg01no169_j16.g1)
ACCAG366427AG366428
length698786
length of high quality
(start - end)
314 (7 - 320)---
definitionCHROMAT_FILE: MSMg01no169_j16.b1 PHD_FILE: MSMg01no169_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:20 2005CHROMAT_FILE: MSMg01no169_j16.g1 PHD_FILE: MSMg01no169_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGATCCGCGGAATTCCTTAGGGACACATATGTCCCCTCTGTCTGTCAG
ACTGCGGAGGCAAGGAAGCTCAAGAAACAATCACATAGGCGGAGGTGTGG
CTACCAGCGGGTGAGGCTGCCTGTCACTCAGATAGGCTCCACGGAGCTCT
GGCAATGTGTCAGGTCACCCTGTAAGAGACTGCAGCTGAGCTGGGTGGGG
TCGTATATTGACAAGGATGGCAAATAATACCATTAGGCCTCCATTTAAAC
CCAGATCTCACGTCAGCACTGGAACACGGTCTATTGGATGTCACTGAACC
TCTCTACCCGTCTTTCCATCGNGTCNTTTTCCGANAACTATNNCTTTTCA
AACTCTCATTATTAACTTGCCTCTTTCACTTCTGAAAAAAACAAGAAGCT
GAATCTGACGCTTAGGGCTTGGAAAGGTGGCTGGCACTGTTGACGTGCTG
GCCACTGCCTTCCAGGTTCTCTGTGGCTTTTAGGCGTCGTGTGGCTTGCA
GTCCTTTATTACTTTATTTACTCTAGACTTAACATATAAATATGAAATAA
TGAAAATGGGGCTTATAAGGAAAGTACTTTTCTAAGAATTACGCCAATGG
TAGTTGTTAGTGGTTCGTAACTATGGATATGTATTGGCCAAAAATGCAAC
TTGGTCTAAATGAGGAACGTGGGGTCCCAGTATGGGGCCGTACCACTC
GTGAATGATACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAATGAAAACAAGCTTCCA
AAACCATCTTTCCCAAATAAAACACTGGAGGGAACATGGGGTTGAACCTG
AATAGGAAGCGGAGAAGGGCCAATCCGGCCATCAGGGGAAGAAAAGGCCC
TAAATCCGGGGAAGGTTCAAGGCCCCAGAATAGGGAAAGGCCAGGGCCAG
AACGGGAATTGGAAGTGGGGGGTTTAGGCAGCAGGGAAAGGGGGAAGGGA
ATAGGGTTTTTCTCCCAGANCNTTTTTTTTTTTCCGAGACCCCCCGCAAC
CGAGGGAAAAAAAATTTTTGAGTGGGATTTCCAAACAAACCCCATTTCTT
TTTTTTTTTTTGTNGTNGGGGTGGGGTGGGGGGAAAAAAGTTGAATCCCA
AAAAGCGGGGGGGGGGGGGCGGGTTTTCCCTCCTTCCTTTCTCTCCTCCC
CCTCCTCCCTTCCCCCCTCTCCTTACCACTCTCCCCCCCCTCCACCCCTC
ATCCTCCATCCCCTTAATCCACCGCTGTTACCCCCCCCTACATTCCTACC
CACTCCCCCCCTCCCCCTTTCCCCTCTCCCACCTCTCCCCCAACCCCGTA
CCCGTAATCTCCTCTACCCCTCCCCTTCCCTTCCATCCATCCTACCCCGC
CCTTCATTCATTCCTCCTTTTACTTCCATTCCCACCTAACACTACTCCCC
CCCCTATATCTCTAAACCGCTACTTCCCCACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_j16.b1 MSMg01no169_j16.b1 CHROMAT_FILE:
MSMg01no169_j16.b1 PHD_FILE: MSMg01no169_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:20 2005
         (314 letters)



>mm_chr17_12174340_12175053
          Length = 714

 Score =  522 bits (270), Expect = e-152
 Identities = 300/310 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattccttagggacacatatgtcccctctgtctgtcagactgcggaggcaaggaagct 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 514 ggaattccttagggacacatatgtcccctctgtctgtcagattgcggaggcaaggaagct 455

                                                                       
Query: 65  caagaaacaatcacataggcggaggtgtggctaccagcgggtgaggctgcctgtcactca 124
           |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct: 454 caagaaacaatcacataggcggaggtgtggctaccagctggtggggctgtctgtcactca 395

                                                                       
Query: 125 gataggctccacggagctctggcaatgtgtcaggtcaccctgtaagagactgcagctgag 184
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 394 gataggctccacggagctctggcaatgtgtcaggttaccctgtaagagactgcaactgag 335

                                                                       
Query: 185 ctgggtggggtcgtatattgacaaggatggcaaataataccattaggcctccatttaaac 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 ctgggtggggtcgtatattgacaaggatggcaaataataccattaggcttccatttaaac 275

                                                                       
Query: 245 ccagatctcacgtcagcactggaacacggtctattggatgtcactgaacctctctacccg 304
           ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||
Sbjct: 274 ccagatctcacgtcagcactggaacacggactaagggatgtcactgaacctctctacccg 215

                     
Query: 305 tctttccatc 314
           ||||||||||
Sbjct: 214 tctttccatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)