Query= MSMg01no170_o20.b1 MSMg01no170_o20.b1 CHROMAT_FILE:
MSMg01no170_o20.b1 PHD_FILE: MSMg01no170_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:01 2005
(315 letters)
>mm_chr17_93627270_93627984
Length = 715
Score = 586 bits (303), Expect = e-172
Identities = 309/311 (99%)
Strand = Plus / Plus
Query: 5 gaattccaaatgtcacacaactgcagaaactatctgcagctggcaaaaccatgcctctcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatgtcacacaactgcagaaactatctgcagctggcaaaaccatgcctctcc 264
Query: 65 tagagcatgaggcacatcatactctgctgctgtagacaggctaaagcagcctcatttccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagagcatgaggcacatcatactctgctgctgtagacaggctaaagcagcctcatttccc 324
Query: 125 tacacttgggatcaaaacaaatgcacattcctataatatttctgcagttttaaaaggaac 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 tacacttgggatcaaaacaaatgcacattcctataatatttctgtagttttaaaaggaac 384
Query: 185 aaaaataccagatttctcactacataagccttgatctttggcctctgggcccaaaatctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaataccagatttctcactacataagccttgatctttggcctctgggcccaaaatctc 444
Query: 245 tgtcctggaggcacttatataggcatttctgtctgtgttaagacatagtctgtgttccat 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 tgtcctggaggcacttatataggcatttctgtctgtgttaagacatagtctgtgatccat 504
Query: 305 cctttatggga 315
|||||||||||
Sbjct: 505 cctttatggga 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no170_o20.g1 MSMg01no170_o20.g1 CHROMAT_FILE:
MSMg01no170_o20.g1 PHD_FILE: MSMg01no170_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:01 2005
(429 letters)
>mm_chr17_93780483_93781315
Length = 833
Score = 733 bits (379), Expect = 0.0
Identities = 413/433 (95%), Gaps = 15/433 (3%)
Strand = Plus / Minus
Query: 1 catttggggaagacaaagacttctgaagacagatttttggtaacactggctggcacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 catttggggaagacaaagacttctgaagacagatttttggtaacactggctggcacagca 675
Query: 61 atatgacagcacctaatgccacaattctatgcagcaaaaaaatggttaaagggtaagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atatgacagcacctaatgccacaattctatgcagcaaaaaaatggttaaagggtaagttt 615
Query: 121 tgtaattcagattttaaaagagagatagcataggagctaatgtgacagtgttttgtatg- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgtaattcagattttaaaagagagatagcataggagctaatgtgacagtgttttgtatga 555
Query: 180 ---aaaaaaaataaaagaaaaatagatggggtaccagaatcctggcacatactcccaata 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaaaaaaaaataaaagaaaaatagatggggtaccagaatcctggcacatactcccaata 495
Query: 237 gggaggaaacaaatgcaaaataaagagtacatggctaactaacatcaatgcctgttttta 296
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 494 aggaggaaacaaatgcaaaataaagagtacatggctaactaacatcaatgcttgtcctta 435
Query: 297 tccccttgcacccaaccccacaggttgaaagctgggcactagaaacatcagcatcttctc 356
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tccctttgcacccaaccccacaggttgaaagctgggcactagaaacatcagcatcttctc 375
Query: 357 tcctgagagtgagtgagttcttttgtttgcttttgtttttgttttgtttggctccccctt 416
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 374 tcctgagagtgagtgagttcttttgtttgc-----------ttttgtttggctccccctt 326
Query: 417 ggtgaggacaagc 429
|||||||||||||
Sbjct: 325 ggtgaggacaagc 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 833
Length adjustment: 9
Effective length of query: 420
Effective length of database: 824
Effective search space: 346080
Effective search space used: 346080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
