BAC Information

Click to search

BAC

Clone NameMSMg01-171D13
Chromosome17 (Build37)
Map Location 25,716,903 - 25,717,157
singlet/doubletsinglet
Overlap geneTmem112
Upstream genePkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8
Downstream geneLOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171D13.T7 (MSMg01no171_d13.b1)MSMg01-171D13.TJ (MSMg01no171_d13.g1)
ACCAG367533AG367534
length740705
length of high quality
(start - end)		278 (46 - 323)281 (83 - 363)
definitionCHROMAT_FILE: MSMg01no171_d13.b1 PHD_FILE: MSMg01no171_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:23 2005CHROMAT_FILE: MSMg01no171_d13.g1 PHD_FILE: MSMg01no171_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGACCAGCCTGGTCTACAGAACAAGTTCCAGGGCAGCCAGGACT
ATGCAGAGCAACCCTGTTTTAAAAAACAAACAAATAAACAAACAAACAAA
CAAACAGTAACCAAACCAACAACAACAAAAACCAAAACCAAAAAGCGGTG
TGTATGGGGGACACCAGCCTGCCTGCCAGTACCTTTGATTCTGCTTTTCC
TGAAGTGAAGGAGGCTAAGACTCTTTAGGCTCAGGTAGGTATGGGATGCT
GCAGTGGACTGTAAAGGTCTGCATAGTCTAAGCAGAACCTTGGAGTCCTT
CCAGAGCTGATCTGNGTGATCCTCCNTTCTTNCTACCAGTGAAATCTGGC
TAGATCCTTGGGCCCTCCCCCCAAAGAACATAAAAGAAGGTCAGGTTGGA
GCTGTTGCACAACCTTTGGGTCCAGTGGGGGACCCACTGACATAATTCAA
AAGGATCGAGGCTAGGTCTAAGTTGCTGGATAAAGATCGTCATCTCCCCT
AGGGCTTCGTAACAGGAATACAATTAGCATCCTCTCGTCATTCTTAGTCC
GCCTGTATAACCATTGAATGAAATATTGTCTTTTTCCCTTATTTTCGATA
ACTGTGGTTATCTTTCAATTTATCTACAATATCTATTAACCCCTCTTTTC
CCACTCCCCTTTTTTCATCCCCTTCTTTTTTTATCCCCTT

NNNACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGTTACCTGCCCTG
TGCTGTTCTGGATGCTGCCATGTTCCTGCCTTGATGATAATGGACTGAAC
CTCTGAACCTGTAAGCCAGCTCCAATTAAATGTTGTCCTTATAAGAGTTG
CCTTGGTCATGGTATCTGTTCACAGCAGTAAAACCCCAACTAACACAATG
GGTATTTTAAAAAGACTTAACACTTAATATGTTTGCATTTGTAAAAACTA
TGGGACTTTTAATTTTTATTGTTGTATTAATGTTAACATGCTATTGTGGG
GATAAATGAAATAGGTAAGGCTCCTAACGAACACTCATGTATTTGTGTGT
CAAGTTGACAAGGGGTCAGCTGCACAAAGAATAAAATTGTGACAATGTAA
CACAGGCTAGGGTCACTAGAGGAGGAAACTTCAGTTGAGAAAATGCTTCC
ATAAGATACAGCTGTAGGCAAGCCTGTAGGGCATTTTCTTAATTAGTGAT
CAGTGATGGAGGGCCCAGCATTATGGATGGAGCCACCCCTGGGCTTGCTG
GTCCTGGATTCTTTAAGAAAGCAGGCTGAGCAAGGCTTGGGAAGCAAGTC
AGTAAGTATCACCCACCATGGCCTCTGCATCAACTCCTACCTCTCGGCTC
CTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_d13.b1 MSMg01no171_d13.b1 CHROMAT_FILE:
MSMg01no171_d13.b1 PHD_FILE: MSMg01no171_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:23 2005
         (278 letters)



>mm_chr17_25716592_25717273
          Length = 682

 Score =  424 bits (219), Expect = e-123
 Identities = 250/275 (90%), Gaps = 24/275 (8%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcaagaccagcctggtctacagaacaagttccagggcagccaggactatgcagagcaac 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttcaagaccagcctggtctacagaacaagttccagggcagccaggactatgcagagcaac 507

                                                                       
Query: 68  cctgttttaaaaaacaaacaaataaacaaacaaacaaacaaacagtaaccaaaccaacaa 127
           |||||||||||                    |||||||||||||||||||||||||||||
Sbjct: 506 cctgttttaaa--------------------aaacaaacaaacagtaaccaaaccaacaa 467

                                                                       
Query: 128 caacaaaaaccaaaaccaaaaagcggtgtgtatgggggacacca----gcctgcctgcca 183
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 466 caacaaaaaccaaaaccaaaaagcggtgtgtatgggggacaccagcctgcctgcctgcca 407

                                                                       
Query: 184 gtacctttgattctgcttttcctgaagtgaaggaggctaagactctttaggctcaggtag 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtacctttgattccgcttttcctgaagtgaaggaggctaagactctttaggctcaggtag 347

                                              
Query: 244 gtatgggatgctgcagtggactgtaaaggtctgca 278
           |||||||||||||||||||||||||||||||||||
Sbjct: 346 gtatgggatgctgcagtggactgtaaaggtctgca 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 682
Length adjustment: 9
Effective length of query: 269
Effective length of database: 673
Effective search space:   181037
Effective search space used:   181037
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |