BAC Information

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BAC

Clone NameMSMg01-173E03
Chromosome17 (Build37)
Map Location 48,027,566 - 48,027,906
singlet/doubletsinglet
Overlap geneFoxp4
Upstream geneTbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi
Downstream geneLOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173E03.T7 (MSMg01no173_e03.b1)MSMg01-173E03.TJ (MSMg01no173_e03.g1)
ACCAG368919AG368920
length706780
length of high quality
(start - end)
336 (118 - 453)---
definitionCHROMAT_FILE: MSMg01no173_e03.b1 PHD_FILE: MSMg01no173_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:54 2005CHROMAT_FILE: MSMg01no173_e03.g1 PHD_FILE: MSMg01no173_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAGACCGCGGAATTC
ATTCCTTACCCAACTCTTACTCTGTGGTTCCCTGGAGCATGAAATTACAA
GATTTACAGGGTGCGCCCAATGTAGGCAGCAGGCCCCCCGCTCCCCGCTT
GTAAGTTCCCTTTCCCTCCCCCCACCCTGCCCTCGGCATCTCCCACTTGG
GTCAGATTCTTCCCACTCTACCTGACAGACTGGTCTGCTCCTTGCCTCTC
TTCTCTTCCCCACCTTCATTAGCATGAAGTACCTACTGTGTGCTAGGTCA
GGTTAGGTGGTAGGGGCTACTGTCCCCACATATAAGGACCTCATGTGCTG
TGGAGCTCTGAGCAGGCCACCCAGAGAAGTCTTGGAGTCCTGGAGGAGTC
CAGCTCCTCAGGGGTCAAGGAGGGGAAAGAGAGGTGTTCCGATGGCGTGA
CAGCACACAGGAAGTGCCATGTGGCAGAGGCAGAGGGGACTGGAAGTAAG
TACCATGGCAGGCAGAAAGCTGACCTGTGCTGGGTTGGCAAGAGGAAAGG
CTGGAGAAGGATGCACAGGCACCAAAAGCTGGGTGCCGCGTCTCCAGGCA
CCCTAGCCTCCCCCTCACTCATTTCTTCATTCATTCTCTAACTCAACCTC
CTCTTTCCATCAAACGTAATTCTTTGCTCCTGTGATGTTTTACCCGATGC
TGCCCC
GGAGGGTGGGGGGGGGGGGCNAACCACANTGCCTCGGTTTATTTTACGAA
GATAGGGGAGGCCGGNGGNGNGGGGTCAGAAAAGANNNGNNNNNNNGNGG
TTGCAAAAAAAAGNNGNNGGGNGGNANNNNNNNNNGNNGAGNGNGGGGGN
GTTTGCCCCGAGGGAGGGGGGGGGGGNNNNNNNGNNNNNNGGGGGNNNNG
GGGGAGGGNNNGGNNNNGNNNNNNGAGNGNNNGGNANANGGGGGNGNAGN
NNANNAGNNAGGAAGGGGAAGGGGAAGAGANANATTTTTTTGAAAGGGGG
AAGGAGGAGGAGAGTTGATATTGGGATGGAGGGGGAGAAGGAAAAAGAGG
TTTTGGGTGATTTGAGAGAGGGGAAGAAAGGAAGGGAAGAGGAGTTAGGG
ACACCGCCCACAGGGGGGGAGAAAGAGAAGGAAAGGAAGAAAGAAGGGGA
AAGAGAGAAAAAAAAAAAAGACGAAAGCGGAAGAGGGGACGGGGGGACAC
GGGGGAGAGGAGGAAGGGGGGAAGAGAGGAGGAGAAAGAGGGGCGGGGGG
AGAGGGAGAAAAACGGGAGGAGGGGGGAAGCGGGAAAAAAAGGGAGGGGG
GGGAGGAGGAGAGAAAGAGGGGAAGAACAAAGAGGAGGGGGGGGGAAAAC
AAGAAAGGAAAGAGGGCGGAAGAGAGGGGGAGAGAGAGAGAAGAGAGGGA
CAGAAGAGGGAGGTTTATTTTTTTTGAGAAAGAAGAGAGAAGAAGAGAAA
GTTAGGTGCAGAAGGTGTGAGATTGTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_e03.b1 MSMg01no173_e03.b1 CHROMAT_FILE:
MSMg01no173_e03.b1 PHD_FILE: MSMg01no173_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:54 2005
         (336 letters)



>mm_chr17_48027371_48028106
          Length = 736

 Score =  598 bits (309), Expect = e-175
 Identities = 331/341 (97%), Gaps = 5/341 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgtaggcagcag-----gccccccgctccccgcttgtaagttccctttccctccccc 55
           |||||||||||||||      |||||||||||| ||||||||| ||||||||||||||||
Sbjct: 196 caatgtaggcagcagccccccccccccgctccctgcttgtaagctccctttccctccccc 255

                                                                       
Query: 56  caccctgccctcggcatctcccacttgggtcagattcttcccactctacctgacagactg 115
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 256 caccctgccctcggcatctcccacttgggtcggattcttcccactctacctgacaggctg 315

                                                                       
Query: 116 gtctgctccttgcctctcttctcttccccaccttcattagcatgaagtacctactgtgtg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtctgctccttgcctctcttctcttccccaccttcattagcatgaagtacctactgtgtg 375

                                                                       
Query: 176 ctaggtcaggttaggtggtaggggctactgtccccacatataaggacctcatgtgctgtg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctaggtcaggttaggtggtaggggctactgtccccacatataaggacctcatgtgctgtg 435

                                                                       
Query: 236 gagctctgagcaggccacccagagaagtcttggagtcctggaggagtccagctcctcagg 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagctctgagcaggccacccagagaagtcttggagtcctggaggagtccagctcctcagg 495

                                                    
Query: 296 ggtcaaggaggggaaagagaggtgttccgatggcgtgacag 336
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggtcaaggaggggaaagagaggtgttccgatggcgtgacag 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)