BAC Information

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BAC

Clone NameMSMg01-173P10
Chromosome17 (Build37)
Map Location 50,449,757 - 50,450,042
singlet/doubletsinglet
Overlap genenone
Upstream geneMocs1, Daam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173P10.T7 (MSMg01no173_p10.b1)MSMg01-173P10.TJ (MSMg01no173_p10.g1)
ACCAG369411AG369412
length717722
length of high quality
(start - end)
315 (46 - 360)286 (381 - 666)
definitionCHROMAT_FILE: MSMg01no173_p10.b1 PHD_FILE: MSMg01no173_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:43 2005CHROMAT_FILE: MSMg01no173_p10.g1 PHD_FILE: MSMg01no173_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAGGAAGAATCCACGGTGAGATGTCCTACAGACCCCCAAACAT
TACACACACTGCCATTGGTTATCTGCCAGAAGATCATATTGCTGAAGACA
CTCACACACTTGAGTCACAGGACATGGGAAAAAGAAATTAAACTGGTTCC
AACCTGGAAGCTTCATCCCTAGTTAACAGCTTTCACTGTGAGAGAAGGTT
CTTCATACAGTGTCGAGAGAAAATATTCAACAGTCACACCCAGGTGTGTA
CCTAGAAAGCTACAGTAACAACTGACCTGGCAAGATGTGCCAGTGGGCAT
CCACTGTTGTTTTAGTGCCCCCCCCCTTATGGCAATAACCAGCCGTCACT
TTCTGCTTAAATTAAAGCTTGCTCAAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGATACAATTTGC
TAAACACATGAAACTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGAGACAGCCAAGGGCTTATGT
TTACTATGATAAAGGTAGTGGTAGGGAATCCTGGTAGATTTGTGAGCAGA
AAAAAAGGAGCAACAAGCTGGCTGCAGGAGCCGATGGAGATAAGGTCGGG
CCACAGAGTGAAGAGAACGTGGCCTGATGCTTTTAAAACCAAGGATGTGT
CTTACAGGCTAAAGGAAAGTGGTGGGACTAGAGAGGAAGACCCATCAGGA
AATAAGTGTAAAGAATTAATTAGTTAGTAAGTTAATTAATAATAATATAC
TAATGTAATTATTTTTTAACCCCCCCCCTAATAATAATAAGCAACGTTGA
TTAACAAGGTAAGAAATGCCGTGCAAATGTTTCCTTCGACGCCCCTTGGG
TTTGCTGCGAGGCTTGTGGCTTCTCTGTGGGTGTCTTTTCTTTTAGCACA
CTGTGGTTTCCTGTTGGTGTGCTCCTCTTCTGTCCCCTCGCTTCTGCTTT
CCTTCCACTGCAGCAGCATGAAGCAAAACATCTGCCGAATGTGTTCTAAG
ATGTGTTCAGGATGTGGGGAGAGTATTTTGAGGAGTAAGGGAAAATCTGA
GCTTATCCATTTTTAGAGACTGGGATTACTATAGATTTGGCAGTACAGAA
CCTGACCCGATCACCTCTGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_p10.g1 MSMg01no173_p10.g1 CHROMAT_FILE:
MSMg01no173_p10.g1 PHD_FILE: MSMg01no173_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:43 2005
         (286 letters)



>mm_chr17_50449557_50450242
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataataataagcaacgttgattaacaaggtaagaaatgccgtgcaaatgtttccttcgac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 486 ataataataagcaacgttgattaacaaggtaagaaatgccgtgcaaatgtttccatcgat 427

                                                                       
Query: 61  gccccttgggtttgctgcgaggcttgtggcttctctgtgggtgtcttttcttttagcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gccccttgggtttgctgcgaggcttgtggcttctctgtgggtgtcttttcttttagcaca 367

                                                                       
Query: 121 ctgtggtttcctgttggtgtgctcctcttctgtcccctcgcttctgctttccttccactg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 366 ctgtggtttcctgttggtgtgctcctcttctgtcccctcgcttctgctttccttcccctg 307

                                                                       
Query: 181 cagcagcatgaagcaaaacatctgccgaatgtgttctaagatgtgttcaggatgtgggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagcagcatgaagcaaaacatctgccgaatgtgttctaagatgtgttcaggatgtgggga 247

                                                         
Query: 241 gagtattttgaggagtaagggaaaatctgagcttatccatttttag 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagtattttgaggagtaagggaaaatctgagcttatccatttttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)