Query= MSMg01no175_o07.b1 MSMg01no175_o07.b1 CHROMAT_FILE:
MSMg01no175_o07.b1 PHD_FILE: MSMg01no175_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:04 2005
(323 letters)
>mm_chr17_47322954_47323676
Length = 723
Score = 611 bits (316), Expect = e-179
Identities = 319/320 (99%)
Strand = Plus / Plus
Query: 4 ggaattcaggtggtcaggcttggcagcaagcacctttacccactgagccatctcgctggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggtggtcaggcttggcagcaagcacctttacccactgagccatctcgctggc 263
Query: 64 ccatcttgaggtttttagcagaaaggtggggaaaatcctgactatgaaagaaaacactgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccatcttgaggtttttagcagaaaggtggggaaaatcctgactatgaaagaaaacactgg 323
Query: 124 caccgggcatccacacagagctgggtttgagtcactgtgttgccctgtggtttggggcaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caccgggcatccacacagagctgggtttgagtcactgtgttgccctgtggtttggggcaa 383
Query: 184 atcacatatctcttctgtgtgcctttgtttccacccagaagaggtgacggtggtacccgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcacatatctcttctgtgtgcctttgtttccacccagaagaggtgacggtggtacccgc 443
Query: 244 aaatgagatcagaggggctgtgggctttcgttaaggcagttctgcggggaaccgtaagcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatgagatcagaggggctgtgggctttcgttaaggcagttctgcggggaaccgtaagcc 503
Query: 304 ctcgctttctctttttgccc 323
||||||||||| ||||||||
Sbjct: 504 ctcgctttctcattttgccc 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no175_o07.g1 MSMg01no175_o07.g1 CHROMAT_FILE:
MSMg01no175_o07.g1 PHD_FILE: MSMg01no175_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:04 2005
(507 letters)
>mm_chr17_47414990_47415896
Length = 907
Score = 926 bits (479), Expect = 0.0
Identities = 501/515 (97%), Gaps = 14/515 (2%)
Strand = Plus / Minus
Query: 1 tagataaagagttctttga--ttttttttttttgaggaaagaaaaccccataatgcttaa 58
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tagataaagagttctttgattttttttttttttgaggaaagaaaaccccataatgcttaa 836
Query: 59 acaaacaaacaaaaaaccccccatggaagaaaatcttagctcgttagctgcttccaccat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 acaaacaaacaaaaaaccccccatggaagaaaatcttagctcgttagctgcttccaccat 776
Query: 119 taaagacactccaccgctgtagaaatggcaagggtaaaacctggagacctttctgatgtc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 taaagacactccaccgctgtagaaatggcaagggtaaaacctggagacctttctgatgtc 716
Query: 179 tgctaacatctatggctgggagctaggggtggcactaagcactggaaatgcccagaccaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgctaacatctatggctgggagctaggggtggcactaagcactggaaatgcccagaccaa 656
Query: 239 ccccacaatggcaaattaacttgcttaaaatgtcaacagagccgtgtgtcagactcaccc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ccccacaatggcaaattaacttgcttaaaatgtcaacagagccgtgtgtcagactcaccc 596
Query: 299 tacaagaatcaagaaaaacatcagcaaaacccagaaacggga------cccgcccactaa 352
|||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 595 tacaagaatcaagaaaaacatcagcaaaacccagaaacgggaggtggg---g---actaa 542
Query: 353 aatacttcccccttcccttcacattccaaaacccaaagctaccatcaaagcaaacaggct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatacttcccccttcccttcacattccaaaacccaaagctaccatcaaagcaaacaggct 482
Query: 413 ttattatttttttaaaagacttatttttattattttatgtgtgtgactgtgtgatcaaat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttattatttttttaaaagacttatttttattattttatgtgtgtgactgtgtgatcaaat 422
Query: 473 gtttcatgtgcgcaattgcctatggaggccagaga 507
|||||||||||||||||||||||||||||||||||
Sbjct: 421 gtttcatgtgcgcaattgcctatggaggccagaga 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
