BAC Information

Click to search

BAC

Clone NameMSMg01-176D24
Chromosome17 (Build37)
Map Location 41,661,916 - 41,662,266
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176D24.T7 (MSMg01no176_d24.b1)MSMg01-176D24.TJ (MSMg01no176_d24.g1)
ACCAG370999AG371000
length1,1991,214
length of high quality
(start - end)
364 (29 - 392)332 (124 - 455)
definitionCHROMAT_FILE: MSMg01no176_d24.b1 PHD_FILE: MSMg01no176_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:46 2005CHROMAT_FILE: MSMg01no176_d24.g1 PHD_FILE: MSMg01no176_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACTATGGGCCTATAGACTACTAAGGGAGAGGATCCGCGGAATTCTG
TCATCCAAATCAGGGAAGTCCTGTGTATTTGGCTGTTGTCCTAGAATGGA
TACTTTTCAGGATGTCAGCTAAGCTGGTACTTAATGAAATCTGATTTTCA
AGTTCCTTTTCTCTCTCTCTCTCTTTTTTTTAAATAAATGTGCACCAATG
TGACTTTGATATTGTTATTTTTATGAAACATCACCTTTCCCAGTGTTTTG
AAAACTAATATTATTCTCCATCACCTACTGATTATTCAGTAAAAAGCTCA
TCAGCAAATTAGCTGGGCCGAGGAAATATGAAGGCTGGACTTCTAACCCC
AGCCAGGAATCCCAGGGCAAGGGCAGACATGAAGACACAGATGTATTTTT
CAGTGCAAATCAGGGAAAGACCATACTGGCAAGTAATAAAACATTTATTT
TTTTTCCCCCCCCCCAGAGAGNNAGAATCGCTCAAAAAAAAAAGAGGGNA
GGCCAGGAGCTNCCGGAAAAACTAAANAGGCCNTTGCGTCAATTATTTGG
GAGATAAAATGAGAGCAAATATGGCTTGTACGCTTAAACTACAGTCTTTA
CACAAACATTAAAATAAGGCTGTTGGACAATATGACAACTTAGCAAAAGA
ACATTACAGATTTTCCATTAGATCTTATGGCTTCTATAACTGTATGGTGT
TTGTTTGTTTGCTTGTTTGTTTTTGTTTTGTTTTTTTAGCATGTTTGCAG
TGCCAGGCATGACTCTTTCCTTTGTATCATAACTCAAATCTAGTCAAGAA
AGTCAATGCTTAATACCACCTTACCTACTGCAACAGTGGGAAAATGTACC
AAGTATGTTCACATTGTACTATATAGGATCTATTACTGCACTGATGTCTA
AGCAATAATTGACTGTTTATAGAGTTTAAATTGAATTCTTTAACTATTAA
CATTTAGAATTTAATTTTAACCAATAAAAAAATTTTTGCTATCTTTTCAA
AAAAAACCACTAATATTGTTTCTAAAATTTCTTAGTCATTTATAAACCAT
ATTGAATATTTCCTTCCCCTCACTTAAACAAAAATTTTTTCCCTCGCCCT
CTCTATTTTTCTGTAAAATTTTTTTTTTAAAAAATCCCTACATTGGTTTA
AAAAAAACTTTATTTTTCTTTAAACCTCTGTCGTGGTATATTTTTTCTA
NNNTTTGCGATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTAGAGGCCTTAAACATATGTGGAAGTTT
CTGCTTTTCCTTTGAAGCCCCGGTTTAATTAAAGAAAACAAAGAATATTT
CTCAGAACACTAAAGAATAAACCTAGGATTTGAACAGAATTTTGAGTTAT
TTTTGAAATGTTTCTAAACATACTTTTTCAATTTTGTGTTGTTTATTGAA
TAAAAATGATATGCTCAGAATTAACAATTATAAAATAAAATGTAGGTGAA
CTCTGAAAAACCTTGAAAAATCTCTATTTTAAAGTGTAAAATATTCAGAC
AAGATTTAAGTTTTAATTTTAGTTTTAACACTTATACCACTTCTTTTCAT
TTTTTCACTCCAATCTCTCCCATGTCAATTAATAATTCTTTATAGAAAAA
TATTTTTTTACCTCCCTTTCATTGGTATGCACATTTTTAGTCTTTATTAA
ATAACAAGATTATAGGCATACCAAAAGATTATTTTGAAATGTATTTCTAT
AATATATCAGTAAATGTTTACTTGATCTTATATAAGTACACACATCAATA
TCCTACTCCCATATGCTGCCTTGAGTAGTAACATCAAGGATTTCCTGGCT
ACCTCTCTAAAGTCTCCACTTGGACCTGCAGTCACTGGTCTTTAGAAATT
GACATTGTATGTCACTCCTCTGGTTTTGGTGTTTAAGTAGGTCAGGTATC
ATTCAGAATGAATGCCACATCCCAAACCAACTATACTTCCTATTCTCTGC
AACTGATAATACTTCACAGGCTGGCCTCCATTGCTTTGTCCAGAACACAT
TAGCCCCATATAAGCCAGACATTCTGCTATTCATGGAACTCCCCAAGCAT
TTCCTCCCTCCTCGTTCCTCTCCTCTCCTCTATTTCCTTCCTTCCTTGCT
TTCTTCCTTCCTTCCCTTCCTTCCTCCCTTCCTTCCTTCCTTCCTTCCTT
CTTCCCTTCCTTCCGGCCTGCCTGGCTGCCCGGCCCTGCCTGCCCTGCCC
GCCCCCCCCCCCTTCCTTCTTTCCTTTCATTCCATCCCTATCTTTCCTTC
CCTTTCTTTCCATCCCCTCCCTTCCTTTCCTTCCCACCCCTCCCCTCCCC
TCTTTCCTTTCTCTTCCATTCCTCTCTCCTTCCTTCTTTCAAAATAATAT
TCCTCTTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_d24.b1 MSMg01no176_d24.b1 CHROMAT_FILE:
MSMg01no176_d24.b1 PHD_FILE: MSMg01no176_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:46 2005
         (364 letters)



>mm_chr17_41661703_41662466
          Length = 764

 Score =  663 bits (343), Expect = 0.0
 Identities = 349/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  ggaattctgtcatccaaatcagggaagtcctgtgtatttggctgttgtcctagaatggat 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ggaattctgtcatccaaatcagggaagtcctgtgtatttggctgttgtcctagaatggat 273

                                                                       
Query: 74  acttttcaggatgtcagctaagctggtacttaatgaaatctgattttcaagttccttttc 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acttttcaggatgtcagctaagctggtacttaatgaaatctgattttcaagttccttttc 333

                                                                       
Query: 134 tctctctctctcttttttttaaataaatgtgcaccaatgtgactttgatattgttatttt 193
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tctctctctcttttttttttaaataaatgtgcaccaatgtgactttgatattgttatttt 393

                                                                       
Query: 194 tatgaaacatcacctttcccagtgttttgaaaactaatattattctccatcacctactga 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tatgaaacatcacctttcccagtgttttgaaaactaatattattctccatcacctactga 453

                                                                       
Query: 254 ttattcagtaaaaagctcatcagcaaattagctgggccgaggaaatatgaaggctggact 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttattcagtaaaaagctcatcagcaaattagctgggccgaggaaatatgaaggctggact 513

                                                              
Query: 314 tctaaccccagccaggaatcccagggcaagggcagacatgaagacacagat 364
           |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tctaaccctagccaggaatcccagggcaagggcagacatgaagacacagat 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)