Query= MSMg01no179_g17.b1 MSMg01no179_g17.b1 CHROMAT_FILE:
MSMg01no179_g17.b1 PHD_FILE: MSMg01no179_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:26 2005
(614 letters)
>mm_chr17_54473857_54474870
Length = 1014
Score = 944 bits (488), Expect = 0.0
Identities = 502/508 (98%), Gaps = 4/508 (0%)
Strand = Plus / Minus
Query: 5 gaattctcatatta--ttcctaatgtgtacacatataaacttaaactcatatgttagaga 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattctcatattagttt--taatgtgtacacatataaacttaaactcatatgttagaga 449
Query: 63 caaatattacaggaaaaactataaaattataaaatttcactaaaatacatacgaagccag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 caaatattacaggaaaaactataaaattataaaatttcactaaaatacatacgaagccag 389
Query: 123 gtatgttgacacataatctcaccaaccatcttggtggcaggggaattttggtagaagaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtatgttgacacataatctcaccaaccatcttggtggcaggggaattttggtagaagaat 329
Query: 183 accaagttaaaataaagccctggctatgtagaaagttcagtaacagtctgtactatatca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 accaagttaaaataaagccctggctatgtagaaagttcagtaacagtctgtactatatca 269
Query: 243 agaccttctcagttaaaattaaacataggagatattggagaccatgaagatgctgctatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agaccttctcagttaaaattaaacataggagatattggagaccatgaagatgctgctatt 209
Query: 303 attcctgatggtaaggccctattgctgatagcacctatgtatcttgctgaacacaaaaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 208 attcctgatggtaaggccctattgctgatagcacctatgtatcttgctgaacacaaagaa 149
Query: 363 gtaaagctggcgcctaactagagacttgaaccctactgacaagtattcattttcctggaa 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gtaaagctggtgcctaactagagacttgaaccctactgacaagtattcattttcctggaa 89
Query: 423 gatacccagcatgctaccaacccttgggcaaaaccaaagctatagtggtgacctgattgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gatacccagcatgctaccaacccttgggcaaaaccaaagctatagtggtgacctgattgt 29
Query: 483 acaatatactagtgcagtaatggcacaa 510
||||||||||||||||||||||||||||
Sbjct: 28 acaatatactagtgcagtaatggcacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_g17.g1 MSMg01no179_g17.g1 CHROMAT_FILE:
MSMg01no179_g17.g1 PHD_FILE: MSMg01no179_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:26 2005
(581 letters)
>mm_chr17_54361894_54362874
Length = 981
Score = 1077 bits (557), Expect = 0.0
Identities = 577/587 (98%), Gaps = 6/587 (1%)
Strand = Plus / Plus
Query: 1 tttattcctgaaatgagaaagcttatccttacctgtggagaatcctggtttctagaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tttattcctgaaatgagaaagcttatccttacctgtggagaatcctggtttctagaacca 254
Query: 61 tgaccaaaagcaacttgagaaggagtgggtttatttggcttacaggttaaagtccattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgaccaaaagcaacttgagaaggagtgggtttatttggcttacaggttaaagtccattat 314
Query: 121 gggtaaaagccaaggtaggaactcaaagaaggagcttgaagcacgaattatgaagggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gggtaaaagccaaggtaggaactcaaagaaggagcttgaagcacgaattatgaagggaca 374
Query: 181 ctgcttactggtttacttcttccagcttgctcatctacctttttttttttt------aat 234
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 375 ctgcttactggtttacttcttccagcttgctcatctaccttttttttttttttttttaat 434
Query: 235 acagctcaggtttacttgcctaaggatgtacagacaacagtggactcagacctctgatat 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 acagctcaggtttacttgcctaaggatgtacagacaacagtggactcagacctctgatat 494
Query: 295 cattcagaaaatgagaacacggacacatgacaatatgatatgtgctatgctccagttgag 354
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 495 ctttcagaaaatgagaacacggacacatgacaatatgatatgtgctatgcttcagttgag 554
Query: 355 gtttttcacttcctaggtaagtctagtttgtgttacattgaagctggttaggacaatgct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtttttcacttcctaggtaagtctagtttgtgttacattgaagctggttaggacaatgct 614
Query: 415 ttcatctcatttccattttcacttttagtgcttttgttttgtgttctattttactctcca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcatctcatttccattttcacttttagtgcttttgttttgtgttctattttactctcca 674
Query: 475 ttccattcagttctgttgtgatgttaccccgtctttctcttctagttatcatgcggagct 534
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 675 ttccattcagttctgttgtgatgttaccccgtgtttctcttctagttatcatgcagagct 734
Query: 535 catccacatgggcactcagcattgtgtgacagatcctatccactgag 581
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 catccacatgggcactcagcattgtgtgacagatcctatccactgag 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
