BAC Information

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BAC

Clone NameMSMg01-180O10
Chromosome17 (Build37)
Map Location 71,389,431 - 71,389,723
singlet/doubletsinglet
Overlap geneMyom1
Upstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik
Downstream geneLpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180O10.T7 (MSMg01no180_o10.b1)MSMg01-180O10.TJ (MSMg01no180_o10.g1)
ACCAG374244AG374245
length722720
length of high quality
(start - end)		600 (43 - 642)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no180_o10.b1 PHD_FILE: MSMg01no180_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:15 2005CHROMAT_FILE: MSMg01no180_o10.g1 PHD_FILE: MSMg01no180_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGAATTCTCAGGCAAATGGATAGAACTAAAAAATATCCTCAGTGAGG
TAACCCAGTCACAAAAGAACACACATGGTATGCACTCACTGATAAGTGGA
TATTAGCCCAAAAGTTCAGAATACCCAAGATACAATTCACAGACCACATG
AAGCTCAATAAGAAGGAAGACTAAAGTGTGGGTGTTTTGGTACTTCTTAA
AAGGCGAACAAAATACTCACAGGAGCAAATAGGTAATAAAGTGTTGAGCA
GAGACTGAAGGAAAGGTCATCCAGAGACTGTTACACCTGGGGATTTATCC
CATATACAGTTACCAAACCCAGACACTCTTGTGGATGACAAGAAGTACAT
GCTGAAAGGAGCTTGATATGGCTGTCTCCTGAGAGGCCCTGCCAGAGCCT
TTCAAATACAGAGGCGGATGTTCACAGCCAACTATTGGACTGAGTGCAGG
GTCCCCAATAGAGGAGTTAGAGAAAGGACTGAAGGAGTTGAAGGGGTTTG
CAACCCCATAGGAAGAACAACAATATCGACTAACCAGAACCCCCAGAACT
CTCAGGGGCCATCAACAAAGGTGCACGTCTTTAATCCTAGGACTTGGGAG
GCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAATGTG
AGTTCCAGGACTGCCCGAGCTA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTTTCCAGAAACAACAAGCTGTGAAGT
GTGGGGGTGGGGGGCAGGCCAAACCCCTTCTTTCCCTTGTGACCTAATGC
CAAAGGCAGACAGTCTCAAGTGACCCAAACCCTGCAGAGTAGAACAAAAG
CGCTCTCTGGTTTAGTCCTTCCGGCTTTAACCAGGAGTTCCTTTCTCGAG
GCCTTTGGCATTCCACAGACAAGCCTTGTGTATTTTAAACCAGTTTCCTT
TGCCAGGTGGTCACACGGGAAGAACTGTGAATATTTAGTTGGAAAAGCCG
TAAAGGTGCTAAGCCGAGCGCTGCCAGTGTGTGGGAGCTGCAAAAATAGT
GCTTTATTGCAAACTTTATAGAGATATGAACAGCATTGTTGACTTGAAGC
CAACCTGAGTGTCGCTCAGTCATTTGGTCAGGCAGCACATGACACAATGT
TTAGTGTCACATCAATTCCCTTGCACTGGGAAGAGCTACTGAAAACCCTT
CAGGATGTGGAAACCATACCCAACTCCCATTTACCACAGCCACAGCCACC
ATCACAAAACCCAAGGAGGCAGGAAATGCCCCCCTGATCCAAAGCTATCT
CATCGAAACGCTTACCCCCTTTTGCCACAGAAATGTTACGCCTTCGAAAT
TAACTACTCGTTGATACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_o10.g1 MSMg01no180_o10.g1 CHROMAT_FILE:
MSMg01no180_o10.g1 PHD_FILE: MSMg01no180_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:15 2005
         (293 letters)



>mm_chr17_71389231_71389923
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactttccagaaacaacaagctgtgaagtgtgggggtggggggcaggccaaaccccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactttccagaaacaacaagctgtgaagtgtgggggtggggggcaggccaaaccccttct 260

                                                                       
Query: 61  ttcccttgtgacctaatgccaaaggcagacagtctcaagtgacccaaaccctgcagagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccttgtgacctaatgccaaaggcagacagtctcaagtgacccaaaccctgcagagta 320

                                                                       
Query: 121 gaacaaaagcgctctctggtttagtccttccggctttaaccaggagttcctttctcgagg 180
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gaacaaaagtgctctctggtttagtccttctggctttaaccaggagttcctttctcgagg 380

                                                                       
Query: 181 cctttggcattccacagacaagccttgtgtattttaaaccagtttcctttgccaggtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttggcattccacagacaagccttgtgtattttaaaccagtttcctttgccaggtggt 440

                                                                
Query: 241 cacacgggaagaactgtgaatatttagttggaaaagccgtaaaggtgctaagc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacgggaagaactgtgaatatttagttggaaaagccgtaaaggtgctaagc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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