BAC Information

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BAC

Clone NameMSMg01-181C12
Chromosome17 (Build37)
Map Location 93,828,616 - 93,829,006
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181C12.T7 (MSMg01no181_c12.b1)MSMg01-181C12.TJ (MSMg01no181_c12.g1)
ACCAG374422AG374423
length725721
length of high quality
(start - end)
654 (66 - 719)295 (70 - 364)
definitionCHROMAT_FILE: MSMg01no181_c12.b1 PHD_FILE: MSMg01no181_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:34 2005CHROMAT_FILE: MSMg01no181_c12.g1 PHD_FILE: MSMg01no181_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACATTAGGTAACCGCAATTTCCAAATGCTATCCATTCCAAAAATAAAG
GAGTCACAGTAGGTTTTGTGGCTAAAGGTAATAAAACTTTAACTTGACCT
TGAAGATTAGGTAGAGTTCAGACGAGGAGCAAGCTGGATTAATACAGCTA
CAGTAATGCTTTCTGTGGTTGAACAAAGTCTTCTAGATTTAAAAGCTTCA
TGAGGGGTTCCTTCCAGTTGCATCCAGCACCGGGCCACCGTGGTTCAAAC
TCAGTGGACAGTCCCACAGTCTCCAGAGGACTTTCCACTCCTGAGGTGCC
CTAGCCCACCCAGGATCTTAGGATCACTGGTGAGTGGAATACAACATCTG
TTCCAACACAACCAGGAGTGCCTGGGGCCAGCAGGAGCAGGGGCACAGGA
AGCCCAACCGACTATTAGCTCAGGTTCCTTCCAGTCAGCACTGGTCTACC
TTGGTTTCAAACACAGTGGACAACCTCCATGGTACCCAGAGGAGATACCA
CTTCCAGGCACTCTAACAAGCCCAGGATAAGATCTTGGGATCCCAGGCTT
ACAGGATCCAAGGAGCTTGGTCACACCAGGATCTCAGAGTCTCAGAGGAA
GCTTGACTGGAAGAACTCTGAAACATGCAGAATCTCACGATCACAAGAAC
ACGGAATCACAGGCTCAGAGAGAGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGAAGATTACTGGTGTTAGGTCTTCTATG
AAGGTCTGATAGAATTCTGCACTAAATCTATCTGGTCCTCGGCTTTTTTT
GGTTGGGAGACTTTTAATGAATGCTTCTATTTCTTTAGGGGTTATGGGAG
TGTTCGGCTGGTTTATCTGATCCTGATTTAACTTTGGTATTTGGTATCTG
TCTAGAAAATTATCCTTTTCATCCAGATTTTTAAGTTTTGTTGAATATAG
CTTCTGTAGAAGGATCTGATGATTTTTTGCATTTCCTCTGTTTCTGCTGT
TATATTTTTTTTTCTTCCCCCCCCCCTGCCTCTGATTTTGTTAACTTTTA
TACTGTCTTTGTACCCTCTGAAATAACTGGCTAATGGTTTATCTTGTTGA
TTTTCTCAAAGAATCAGCTCCTGCTTTGGTTGATTCTTTGCAGTTTCTTT
CTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTCTTTGGCAC
ACTTTGTCCATTTCAGCCCTGAGTTTAATTATTTCCTGCTGTCGACACCT
CTTTGGGATATTTGCTTCCTATTGGTCCAGAGATTTCTATGTGGGTCTTT
TTTACTGCTCACGTATGCTCTTTCCGGGTTCTTTTTTGGAGGTTTTCATA
TCTATGACTTTTTCCCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_c12.b1 MSMg01no181_c12.b1 CHROMAT_FILE:
MSMg01no181_c12.b1 PHD_FILE: MSMg01no181_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:34 2005
         (654 letters)



>mm_chr17_93828616_93829669
          Length = 1054

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaatttccaaatgctatccattccaaaaataaaggagtcacagtaggttttgtggctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcaatttccaaatgctatccattccaaaaataaaggagtcacagtaggttttgtggctaa 332

                                                                       
Query: 61  aggtaataaaactttaacttgaccttgaagattaggtagagttcagacgaggagcaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aggtaataaaactttaacttgaccttgaagattaggtagagttcagacgaggagcaagct 272

                                                                       
Query: 121 ggattaatacagctacagtaatgctttctgtggttgaacaaagtcttctagatttaaaag 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggattaatacagctgcagtaatgctttctgtggttgaacaaagtcttctagatttaaaag 212

                                                                       
Query: 181 cttcatgaggggttccttccagttgcatccagcaccgggccaccgtggttcaaactcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cttcatgaggggttccttccagttgcatccagcaccgggccaccgtggttcaaactcagt 152

                                                                       
Query: 241 ggacagtcccacagtctccagaggactttccactcctgaggtgccctagcccacccagga 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ggacagtcccacagtctccggaggactttccactcctgaggtgccctagcccacccagga 92

                                                                       
Query: 301 tcttaggatcactggtgagtggaatacaacatctgttccaacacaaccaggagtgcctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  tcttaggatcactggtgagtggaatacaacatctgttccaacacaaccaggagtgcctgg 32

                                          
Query: 361 ggccagcaggagcaggggcacaggaagccca 391
           |||||||||||||||||||||||||||||||
Sbjct: 31  ggccagcaggagcaggggcacaggaagccca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)