BAC Information

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BAC

Clone NameMSMg01-181M21
Chromosome17 (Build37)
Map Location 22,489,503 - 22,490,149
singlet/doubletsinglet
Overlap gene6330416L07Rik
Upstream geneA830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624
Downstream geneZfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181M21.T7 (MSMg01no181_m21.b1)MSMg01-181M21.TJ (MSMg01no181_m21.g1)
ACCAG374870AG374871
length763740
length of high quality
(start - end)		272 (39 - 310)646 (67 - 712)
definitionCHROMAT_FILE: MSMg01no181_m21.b1 PHD_FILE: MSMg01no181_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:21 2005CHROMAT_FILE: MSMg01no181_m21.g1 PHD_FILE: MSMg01no181_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TCTCCTTTGGCACCTGCAATCCTCCCTCCTATTTTTCCTTAAGTGTCCCC
AAGCTCCATCAACTATTTGGCTGTAGGAGACTGCATCTGTCTGAGTCAGA
GGCTGGGTATACTCACTCAGAGCAGAGCACAGCCATGCTAGCTTCCTGTC
TACAAGCATAACAGAGTATCATTAATAGTGTCAGGGATTCAGGGATTGGT
GCTTGTCCATAGAATACGTCTCAAGTTGGGTTAGTTTTTTGGGGTTTTTT
TTTTTTTNNTTNNNTTTTTTTTTTTTTNNTTTTTNNTTTTTTTTTTTTTT
TTTTNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTTTTTTTTTTTCCCCCTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNT
TTNTTNTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTNTTTTNTTTNTTT
TTTTTNTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNN
NTTTNTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTNNTTTTTTTTTTTTTTTTTTTTTCTTTNNNTTTTTTCCTTTTTTTT
CCTTTTTCTTTTTCCTTTTTCCCCCTTTCTTTTTCTTTTTCCCCCTTTTT
TTTCCTTTCTTCN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTAAGGATGTGACAAAATACACTGTTTATTTTG
GCATCTTAGACAGCCACAGCTTTTACACAAAACTTTGAGTTTTAAAAGTG
GATTTTTCTGTGCTTCCTATTAGAGCAAATTTAGTGTGCTTCCAAGAAGA
CAAACTTGTTTCTGACTGCACAACCACAATCTTGCCATCTAGTGGTGAAA
GTGGTACAGGGCAGGATGAATTCACCCTTAGGCTGTGGGCAGTGTGCTGA
GAAACCACTGACTCTTGAGACACCTATATCCTATCAAAATCCTGAGTTTC
TGAAGTATCTTCCTCTAAGTCAATATTGCTAACAGATATTTTACTTGTAG
TAGTGAATGTCTGTGAGGGAAGAATAAAAAAAGGTGTTTTTAGTGTTACT
TAATTTTCACAGAGAAGGAATTCAGCTTCCCCGAAGGCTCTTCAGAATAA
ATTACTCTGTCAGAAATTTAAGATATTTCATACAAGTGAAGAAAGTGCAG
CTGGAATTGCAACTTTAACTTCAAGTGCTATTTTCATGGAACATTTTATT
TTAATTAATCATTTTTTTGACTGAATCTTTCTGCTTTTCTATCTTGTTTT
CAAACCTGGTATTCTATTCCTTTCCTTATCTCTTTATATTTTTCATATCT
TGTTTCATCTCAGTTTGGATTTCCTTTCAGTGTTTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_m21.g1 MSMg01no181_m21.g1 CHROMAT_FILE:
MSMg01no181_m21.g1 PHD_FILE: MSMg01no181_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:22 2005
         (646 letters)



>mm_chr17_22489303_22490349
          Length = 1047

 Score = 1212 bits (627), Expect = 0.0
 Identities = 642/647 (99%), Gaps = 1/647 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaggatgtgacaaaatacactgtttattttggcatcttagacagccac-agctttta 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 847 tttaaggatgtgacaaaatacactgtttattttggcatcttagacagccacaagctttta 788

                                                                       
Query: 60  cacaaaactttgagttttaaaagtggatttttctgtgcttcctattagagcaaatttagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 cacaaaactttgagttttaaaagtggatttttctgtgcttcctattagagcaaatttagt 728

                                                                       
Query: 120 gtgcttccaagaagacaaacttgtttctgactgcacaaccacaatcttgccatctagtgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gtgcttccaagaagacaaacttgtttctgactgcacaaccacaatcttgccatctagtgg 668

                                                                       
Query: 180 tgaaagtggtacagggcaggatgaattcacccttaggctgtgggcagtgtgctgagaaac 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 667 tgaaagtggtacagggcaggatgaattcacccttagactgtgggcagtgtgctgagaaac 608

                                                                       
Query: 240 cactgactcttgagacacctatatcctatcaaaatcctgagtttctgaagtatcttcctc 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cactgacttttgagacacctatatcctatcaaaatcctgagtttctgaagtatcttcctc 548

                                                                       
Query: 300 taagtcaatattgctaacagatattttacttgtagtagtgaatgtctgtgagggaagaat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taagtcaatattgctaacagatattttacttgtagtagtgaatgtctgtgagggaagaat 488

                                                                       
Query: 360 aaaaaaaggtgtttttagtgttacttaattttcacagagaaggaattcagcttccccgaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaaaaaaggtgtttttagtgttacttaattttcacagagaaggaattcagcttccccgaa 428

                                                                       
Query: 420 ggctcttcagaataaattactctgtcagaaatttaagatatttcatacaagtgaagaaag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggctcttcagaataaattactctgtcagaaatttaagatatttcatacaagtgaagaaag 368

                                                                       
Query: 480 tgcagctggaattgcaactttaacttcaagtgctattttcatggaacattttattttaat 539
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgcagctggaattgcaactttaacttcaagtgctattttcatggaacattttattttaat 308

                                                                       
Query: 540 taatcatttttttgactgaatctttctgcttttctatcttgttttcaaacctggtattct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 taatcatttttttgactgaatctttctgcttttctatcttgttttcaaacctggtattct 248

                                                          
Query: 600 attcctttccttatctctttatatttttcatatcttgtttcatctca 646
           ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 247 attcctttccttatctctttatatttttcatattttgtttcatctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1047
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1037
Effective search space:   659532
Effective search space used:   659532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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