BAC Information

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BAC

Clone NameMSMg01-183E01
Chromosome17 (Build37)
Map Location 72,339,762 - 72,340,069
singlet/doubletsinglet
Overlap geneAlk
Upstream geneMylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4
Downstream geneYpel5, Lbh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183E01.T7 (MSMg01no183_e01.b1)MSMg01-183E01.TJ (MSMg01no183_e01.g1)
ACCAG375902AG375903
length708692
length of high quality
(start - end)
314 (44 - 357)556 (79 - 634)
definitionCHROMAT_FILE: MSMg01no183_e01.b1 PHD_FILE: MSMg01no183_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:13 2005CHROMAT_FILE: MSMg01no183_e01.g1 PHD_FILE: MSMg01no183_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGGGTCATGCAGCGACTCCATGGGTAACGTACTGAGCAAGTGTCAG
ACTTTCTTTGAAAGTAAACCATTTTAAATGCCCACCTGTAAGATACAAAT
GTTTTGTTTTCTCTTTGCTAACACTTGATACTATCACTTTTTTTTTTCTC
CATTTTAACCATCCTCACAGAGATGTGTCAATTATGCATTACGGAAGTGG
TTTCCAGGTCTCACTTCCTATCTGTGGGCAGATGAGTCTGGTAATTCTTT
TCAGTGCCAGAATCTCTCTTTGATTCTTGGCACGAGCTGAGTACGCACTG
ACTAGTATTTAATATAAATGCCTGACTTGGAAGACTTGAGAACCATAAAG
AAAAACAAGTTGCCGCGACCACACTGGCATGTGGGCATTGCCAGGCTCCC
CACTAACGACTGCTCCACTTGAAAGGGGTTTTGCCAGGGAAGCCACCAAC
ACTTACAGAATACCTGTAGCGAGCTTAGAAAATGTGCTAAATCCTGTGGC
ACCGGCAAATTCCAAGGATTTAAGATGCAGAATATCAAAAGCCCAAATCC
GGTCTAAAGAACTAATTAGTGCGTGCCCCCTTGAAAGTTGTCGAAAGCCA
CTCTATTCGCCCTTTTATATGTCCCTCCCCCAATCTCGTTTTTTTCTATC
CTTTTATG
CACGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTATACCCCAT
TTTTTAATAGGGTTATTTGATTTTCTGGAGTCCATCTTCTTGGGTTCTTT
ATATATATTGGATATCAGTCCCCTATCTGATTTAGGATTGCAAAACACAT
GAAACTCAAGAAGAAGGAAAACCAAAGTGTGGATACTTCGTTCCTTCTTA
GAATGGGGAACAAAATAACCAGGGAAGGAGTTACAGAGACAAAATTCAGA
GCTAAGATGGAAGGAAAGACCATCTAGAGACTGCCCCACCCAGGGATCCA
TCCCATATACAACTATCAACCCAGACAATATTGCATATGCCAGAAAGATT
TTGCTGACAGGACCCTGACATACCTCTCTCTTGTGAGGCTATGCCAGTGC
CTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACA
GGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTC
TGAAACCCTATAGGAGCAACAATATGAACTAACCATTTACCCCCCTGCAA
CCCCCCAACTGTGTCTCTAGTTGCATATGTAACAGAGGATGGTCTAATCA
GCCATTATTGTGAGGAGAGGCCCTTGGTCTTGCAAAGAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_e01.b1 MSMg01no183_e01.b1 CHROMAT_FILE:
MSMg01no183_e01.b1 PHD_FILE: MSMg01no183_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:13 2005
         (314 letters)



>mm_chr17_72339390_72340103
          Length = 714

 Score =  542 bits (280), Expect = e-158
 Identities = 302/310 (97%), Gaps = 2/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgggtcatgcagcgactccatgggtaacgtactgagcaagtgtcagactttct 64
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 680 gaattcctggttcatgcagcgactccatgggtaatgtactgagcaagtgtcagactttct 621

                                                                       
Query: 65  ttgaaagtaaaccattttaaatgcccacctgtaagatacaaatgttttgttttctctttg 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 ttgaaagtaaaccattttaaatgcccacctgtaagatacaaatgttctgttttctctttg 561

                                                                       
Query: 125 ctaacacttgatactatcacttttttttttctccattttaaccatcctcacagagatgtg 184
           |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||
Sbjct: 560 ctaacacttgatactatcacttttttttt--tccattttagccatcctcacagagatgtg 503

                                                                       
Query: 185 tcaattatgcattacggaagtggtttccaggtctcacttcctatctgtgggcagatgagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 tcaattatgcattacggaagtggtttccaggtctcacttcctatctgtgagcagatgagt 443

                                                                       
Query: 245 ctggtaattcttttcagtgccagaatctctctttgattcttggcacgagctgagtacgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 442 ctggtaattcttttcagtgccagaatctctctttgattcttggcacgagctgagtactca 383

                     
Query: 305 ctgactagta 314
           ||||||||||
Sbjct: 382 ctgactagta 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)