BAC Information

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BAC

Clone NameMSMg01-183O16
Chromosome17 (Build37)
Map Location 57,587,255 - 57,587,884
singlet/doubletsinglet
Overlap geneEmr1
Upstream genePtprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1
Downstream geneEG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183O16.T7 (MSMg01no183_o16.b1)MSMg01-183O16.TJ (MSMg01no183_o16.g1)
ACCAG376364AG376365
length739713
length of high quality
(start - end)		636 (39 - 674)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no183_o16.b1 PHD_FILE: MSMg01no183_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:03 2005CHROMAT_FILE: MSMg01no183_o16.g1 PHD_FILE: MSMg01no183_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CTCCTTGTATACCATCAGCCATGTGGGTACAGTCATCTCCCTGGTATGTC
TCGCCTTGGCCATAGCCACCTTCCTGCTGTGTTGTGCTGTTCAGAACCAC
AATACCTACATGCACCTGCATCTTTGTGTGTGTCTCTTCTTGGCCAAGAT
TCTCTTCCTCACCGGTATAGACAAGACTGACAACCAGGTTTGTGATCCTT
GGGCTGTACCCCTATCCAGCTGCACCATCTGCCCATGTTCCTTTTGCTTA
TCACTATCTAGTTCCCTCTCCCGGGGCCTTTTCATAGTGTCCCCTGACAG
TGCCTCAGTTTTCTCTGTATTGCTGTGATAAACAATATGACTAAAAGCAA
CTAGGGCAAGAAAAGGAATTTTTTAGCCTATACTTTCATATCACAGTCCA
CCAAGGCAAGAACTAAAGTAGGGACCATTTAGGAATGCTGGTTGCTGGCT
TTCTCCTCTTGACTTACTCAGCCTGCTTCCTTATACAATGTAGGACTACC
AACCCGGGATGGTGTTGCTCATGATGAGCTGGGCCTTCCCATCTCAATGC
TCCACACTATTACCTACAGGTTAATCTTATCAAGGCAATTCATTAGTCAA
GGTTTCCTCTCCCCAGTTGACTTCAGTTTGTGTCAGGTTGACAAGAAAAT
AACCAGCATAATCAAGCTCTCACTGAATTGATCTATTGT

AACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGGTACTGCTGGCTTCTACAGAC
TCTAGATACCTGGGTTGGCGACCTTAGCTGCCCAGTTGTACCCCCTAACC
AAAGAAGGGGAGGTGTCTGTGTGGACCCCAGATCACCAGAAAGCCTTTAA
AGAGATTAAAAAGGCCCTACTGATGGCCAGCCTATGCCTGACCTAACCAA
GCCTTTCACTCTTTATGTGAAAGAGAGAGCAGGAGTCACCAGAGGAGTCC
TTACTCAGACTTTGGGACTTTAAAAAAGGCCAGTGACTTACCTATCCAAG
AAGTTACACCCTGTTGTTCAGTACCCCCCCTTTCTTGCCTGAAAGCTATT
GCTGCCATAATCTGCTCGTCAAGGATGCTGATAAGCTCACTCTGGGACAG
CAAATAACTGTAGTGGCATCCCACATTCTTGAAAGCATTACCAACGCTCC
TGTGACACATCAGAGCTTTTTGTTGTCTAAATGAGTGACCTTCGCTTCAT
TCCACCTGCTGTCCCACTGTGTGAGACTGCACCTACTCATCACTGCGCTG
ACATTCTGGCAGAAGAAATGATCTGAATTATCAGATCAGCCTTGGCCTGA
GGGTACGAGCTGTTACTCTGATGACAGTATCCTCGAGGTTACGGTTACTA
TAATGCGGCGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_o16.b1 MSMg01no183_o16.b1 CHROMAT_FILE:
MSMg01no183_o16.b1 PHD_FILE: MSMg01no183_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:03 2005
         (636 letters)



>mm_chr17_57587049_57588084
          Length = 1036

 Score = 1141 bits (590), Expect = 0.0
 Identities = 620/630 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattctccttgtataccatcagccatgtgggtacagtcatctccctggtatgtctcgc 66
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 207 ggaattctccttgtatatcatcagccatgtgggtacagtcatctccctggtatgtcttgc 266

                                                                       
Query: 67  cttggccatagccaccttcctgctgtgttgtgctgttcagaaccacaatacctacatgca 126
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 267 cttggccatagccaccttcctgctgtgtcgtgctgttcagaaccacaatacctacatgca 326

                                                                       
Query: 127 cctgcatctttgtgtgtgtctcttcttggccaagattctcttcctcaccggtatagacaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctgcatctttgtgtgtgtctcttcttggccaagattctcttcctcaccggtatagacaa 386

                                                                       
Query: 187 gactgacaaccaggtttgtgatccttgggctgtacccctatccagctgcaccatctgccc 246
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 gactgacaaccaggtttgtgatccttggggtgtacccctatccagctgcaccatctgccc 446

                                                                       
Query: 247 atgttccttttgcttatcactatctagttccctctcccggggccttttcatagtgtcccc 306
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgttccttttgctcatcactatctagttccctctcccggggccttttcatagtgtcccc 506

                                                                       
Query: 307 tgacagtgcctcagttttctctgtattgctgtgataaacaatatgactaaaagcaactag 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 507 tgacagtgcctcagttttctctgtattgctgtgataaacaatatgactaaaagcaacttg 566

                                                                       
Query: 367 ggcaagaaaaggaattttttagcctatactttcatatcacagtccaccaaggcaagaact 426
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 567 ggcaagaaaaggaattttttagcctatactttcatatcacggcccaccaaggcaagaact 626

                                                                       
Query: 427 aaagtagggaccatttaggaatgctggttgctggctttctcctcttgacttactcagcct 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaagtagggaccatttaggaatgctggttgctggctttctcctcttgacttactcagcct 686

                                                                       
Query: 487 gcttccttatacaatgtaggactaccaacccgggatggtgttgctcatgatgagctgggc 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gcttccttatacaatgtaggactaccaacccgggatggtgttgctcatgatgagctgggc 746

                                                                       
Query: 547 cttcccatctcaatgctccacactattacctacaggttaatcttatcaaggcaattcatt 606
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 747 cctcccatctcaatgctccacactattacctacaggttaatcttatcaaggcaattcctt 806

                                         
Query: 607 agtcaaggtttcctctccccagttgacttc 636
           ||||||||||||||||||||||||||||||
Sbjct: 807 agtcaaggtttcctctccccagttgacttc 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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