BAC Information

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BAC

Clone NameMSMg01-186F21
Chromosome17 (Build37)
Map Location 36,373,594 - 36,373,907
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333
Downstream geneLOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186F21.T7 (MSMg01no186_f21.b1)MSMg01-186F21.TJ (MSMg01no186_f21.g1)
ACCAG378073AG378074
length743794
length of high quality
(start - end)
584 (46 - 629)120 (89 - 208)
definitionCHROMAT_FILE: MSMg01no186_f21.b1 PHD_FILE: MSMg01no186_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:20 2005CHROMAT_FILE: MSMg01no186_f21.g1 PHD_FILE: MSMg01no186_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTCTCATAGGGCAAAACGAACTCATTCCGGCATCCCAGGCTGCT
TTACTCAAGCCACTGCACACAGCAAGGGTCCTATACAAGATTATCAAGCA
CATGAGTACAGGGAAAGGTGTCTCTTTTAGGGGCGTCTAGCCAGGGGAAG
GGGTGCCACAGTCCTTAGAACCACATTGCTGTCCGAGTTCACATTTTTAA
AGCATCTTTCCAGGGATCGGCTCTTCTCTGATATTTCCAGGAAGACTTCA
GGCTCTGCTGATTCCTCCGCTGCCTCCTCTGCCTGGGAGCCTCCATGGAA
CTCTCAGGCTCCTCTGAGCTACTCCTCACGCTGCAGGCAGGAAAAGTTTG
GATGGACCTACTTGAAGCTCAAGATCTGACTGAGCCCAAGTTAATTTGTC
AAAGAGATGGTGGCTGCCTTTACAAAGCTTCCATTTGCTTGTTCCTTATG
CAGGAGTCTGATGGAAACAAATTCCTACTTACAGTTACCTTACCAACTAC
TGCACTCTGGTACTTGGTCCAGCCACTTCGACATTGCATGTGACTTTATG
TTAACTTTATATTTAACCACTTATTGATTTATATTAATCTTAATGTAAAT
TTTGTTCTTATTAAATTTGCCTCTTAATGTTTCCCCCAGAGGTGTACAGT
TTTCACCCCCTGGGTCATGGTCTGTATCTTCACATCCTAATAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAAATGAGTCCTGATACAGAC
AAGAGCAAGACAAGCTGTCCAGTGCCCACTCCATTTATTTCAAATAATTG
TTTTTTTGTTTTGTAAGATTTGTTTATTGTTTATTTATTTATTTATTTAT
TTATTCACTCCACCCCCCNACCCTTCCTCTTCCCTCCCACCCATTTTTTA
ACTATCTCCTCCCCACCTCCTTTATTTCTCTCACCCCCCCATAAACCTTT
CAATACCCACTTACACCCCATTTTTTTTTATTTCCCCCCTCACAACAATC
ATCCAAAATTTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTTATATTTTAT
TTTTTATTTTTTTTTAACTCCCCCCCCCAAAAAAAAAAAAAAAACTTGTG
GGGGGGGGGGCCTTTTTTATATCCTTTCTTTTTCCTTTTCTATCACCTAC
CCCTCCTTTCTATCTTCCTTCCTCTCTCCCACTACCTTCCTTCTAATTTT
TATCCCTCTCTCTTTATATTCATCTTTTCCTATCTCTCTATCTCCCTATT
CATTTCTTTCCCCCCATAATAATTTTCCTCATACTCTATATAATCCCAAA
ACTACATCTTTTATTCCTCGTCACCTAATCATTAACTATTTCCTTTCTTA
TTTTTTTCCCCTTCCCCCCCCACCTTCCCCCCCTTCCTCTCTTCTCACTC
CCATTCCCTCCCCCGCCCTCTCTATACTTATTTCCCCCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_f21.b1 MSMg01no186_f21.b1 CHROMAT_FILE:
MSMg01no186_f21.b1 PHD_FILE: MSMg01no186_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:20 2005
         (584 letters)



>mm_chr17_36373297_36374276
          Length = 980

 Score =  474 bits (245), Expect = e-138
 Identities = 299/319 (93%), Gaps = 7/319 (2%)
 Strand = Plus / Minus

                                                                       
Query: 190 gagttcacatttttaaagcatctttccagggatcggctcttctctgatatttccaggaag 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gagttcacatttttaaagcatctttccagggatcggctcttctctgatatttccaggaag 552

                                                                       
Query: 250 acttcaggctctgctgattcctccgctgcctcctctgcctgggagcctccatggaactct 309
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 551 acttcaggctctgctgattcctctgctgcctcctccgcctgggagcctccatggaactct 492

                                                                       
Query: 310 caggctcctctgagctactcctcacgctgcaggcaggaaaagtttggatggacctacttg 369
           |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 491 caggctcctcagagctactcctcaggctgcaggcaggaaaagtttgggtggacctacttg 432

                                                                       
Query: 370 aagctcaagatctgactgagcccaagttaatttgtcaaagagatggtggctgcctttaca 429
           ||||||| |||||||    |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 aagctcaggatctga----gcccaagttaatttgtcaaagagatggtggctccctttaca 376

                                                                       
Query: 430 aagcttcc-atttgcttgttccttatgcaggagtctgatggaaacaaattcctacttaca 488
           ||||| || || |||||||||||||||||||||||||||||||||||  | |||||||||
Sbjct: 375 aagct-cctatgtgcttgttccttatgcaggagtctgatggaaacaacctgctacttaca 317

                              
Query: 489 gttacctta-ccaactact 506
           ||| ||||| || ||||||
Sbjct: 316 gtttccttaacccactact 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 980
Length adjustment: 10
Effective length of query: 574
Effective length of database: 970
Effective search space:   556780
Effective search space used:   556780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)