BAC Information

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BAC

Clone NameMSMg01-188O17
Chromosome17 (Build37)
Map Location 37,474,934 - 37,475,275
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103
Downstream geneOlfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188O17.T7 (MSMg01no188_o17.b1)MSMg01-188O17.TJ (MSMg01no188_o17.g1)
ACCAG379777AG379778
length741730
length of high quality
(start - end)		314 (61 - 374)342 (380 - 721)
definitionCHROMAT_FILE: MSMg01no188_o17.b1 PHD_FILE: MSMg01no188_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:44 2005CHROMAT_FILE: MSMg01no188_o17.g1 PHD_FILE: MSMg01no188_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTTNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTTCCCCTGGAATCTGTCCTCACTGCAGGAG
GGATAGTCTTTAGGTCAGGACTCAGGCTGTATACTCAGATTTAGAAATAT
TTACATTTGAGTTAATGCAAAACTCAGAGCAGTCTCAGCGAGGCTTGTGT
GGTGTGGCATTTCTTTTGTTTTACCAACCCTGCCTAGGGAAGTTGGACCT
TGCCTCTCCTTGCCTCCAGGAAATTATTTTTAAGCAAACAACATTATTAC
AGATCTATCCGGGTGTTGTTTAAAATAAAGTTTAAGCTTAAGATTTATGA
AAGGTCTATGAGGCTGTGGAATTTCTATTGGCCTCCCCCGCGGCCTGCCT
ATTCCATATAGAATTATTATAGATTTACAAGGTTGTTTTTTTTTTTTTTC
CTTTGCATCCTGATAATTGTAAAGGGTTTGCTTCTAGTGAGCTTGTGATC
ATTGGAAAGTTTTGCTTCTAGGTATGGCTAATAGCCTTACATTATGCAAG
ATTTTTTTTTTTGTCTCTGCTTCAGCACAAGAAGCTAAGACTTTGAATCT
TTCAGTGCATATTGTTTCTTATATAGAACACATTCTATTATCTAATGCCT
CTGAAGGGAATTTTACTACAAATCTTTGCTCCTATCCACCCCGCTTTAAA
GTTTTGTTCAATCATTGTTGCTCTACATAGCATTACAGGCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATATCGGTGATCAGTACAGATT
TAGTTTTAAGTCATGTCTTATAGTGAACTGCTCATTTATAATTCCTAAAG
AGCTAAGTCATTCACTGAATAAAATATTTTTAGGTCAATTTAGAAAAATA
AATAAATATGAATGTATTTCCTTACTAGAAGGCAGAGTTCCTTATGAAAA
GTAAGGTTAAATAAAGAAAACACATAAAAGGCAGAGTTTCTTATTATGAA
AAGTAAAGTTAGATTAAAAAACAAAAAACAAGGAGAGCTTGCAACCTGTA
GTAACGTATATTTTAGTTGCACCACCGCAGACAGACAGACTACTTTGTCA
TAATACAACAGGTGCCAGGGACCTGCTAAAGGAACTGTGGTGAAAGTGAG
TTCAACTTGGAACATACCTTTATAGCTGAAGGGTGGATTTATTTCTGTCA
AACTGAAATGATTTCAAATATGTCATAAGACAAAAGTAGGATTTATAGAA
ACCAAAGGCATCGATACTTAAAAAGACATTGTTTTAGTGAAACAAGGAAG
GAACTTGAGCTCACAGAAAGTAGTTCTGTATTTAAGGATCTCAAGAAAAA
GTAAACAAGAGATATGTACAGCAATATTTTTCACTGAAGATGTCACCTGA
TTTCTTGTTTGAGAAAATGTTCAAGCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_o17.g1 MSMg01no188_o17.g1 CHROMAT_FILE:
MSMg01no188_o17.g1 PHD_FILE: MSMg01no188_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:44 2005
         (342 letters)



>mm_chr17_37474734_37475475
          Length = 742

 Score =  661 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagacagactactttgtcataatacaacaggtgccagggacctgctaaaggaactgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gacagacagactactttgtcataatacaacaggtgccagggacctgctaaaggaactgtg 483

                                                                       
Query: 61  gtgaaagtgagttcaacttggaacatacctttatagctgaagggtggatttatttctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtgaaagtgagttcaacttggaacatacctttatagctgaagggtggatttatttctgtc 423

                                                                       
Query: 121 aaactgaaatgatttcaaatatgtcataagacaaaagtaggatttatagaaaccaaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaactgaaatgatttcaaatatgtcataagacaaaagtaggatttatagaaaccaaaggc 363

                                                                       
Query: 181 atcgatacttaaaaagacattgttttagtgaaacaaggaaggaacttgagctcacagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atcgatacttaaaaagacattgttttagtgaaacaaggaaggaacttgagctcacagaaa 303

                                                                       
Query: 241 gtagttctgtatttaaggatctcaagaaaaagtaaacaagagatatgtacagcaatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtagttctgtatttaaggatctcaagaaaaagtaaacaagagatatgtacagcaatattt 243

                                                     
Query: 301 ttcactgaagatgtcacctgatttcttgtttgagaaaatgtt 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttcactgaagatgtcacctgatttcttgtttgagaaaatgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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