BAC Information

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BAC

Clone NameMSMg01-189E16
Chromosome17 (Build37)
Map Location 61,144,671 - 61,144,954
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189E16.T7 (MSMg01no189_e16.b1)MSMg01-189E16.TJ (MSMg01no189_e16.g1)
ACCAG380026AG380027
length695739
length of high quality
(start - end)
313 (35 - 347)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no189_e16.b1 PHD_FILE: MSMg01no189_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:14 2005CHROMAT_FILE: MSMg01no189_e16.g1 PHD_FILE: MSMg01no189_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGAT
CTCCTTGTCTTGGTCTCCTGGGATTAAAGGCATGTATGACCTTGCCTAAG
CCTAAGCTTTTCATAGTTACTATGCCTCAAGATCGCCATGTCAAGATCCA
GGTCAGAAACATTTGTGTCTTCCAGCCTCAAGATCAGGATCATAGGTGAG
CCTTTCATTTCTGGACTGTGGTTAATTACAGATATAGTCAAGTTGACAAC
CAGGAATAGCCATTACAGAGAGTAACCTGGAACTGGAGTTCTCTATAGCT
GTGAGGCTCTGTTGGCTTCCTGAGAATGGAGCCTGCCTTCTCTGCTTTAG
TACTCTCCNNTGCTGAATCATGTTTTCAGCCATTATCCACACATTTTTAA
CCCTAATCTGACAAATAAAGACAGTGCCCTGCTGTTGCTCTGCTGGCACC
CACATGCCATGGCGACTTTTTACTTTTTTTGAATCAGTAGTTTGTAAAAT
ACAGTAAATAAAATTAAATGTAGAAACGATCTTTCATAAATTGCAATAGG
CAAAGTAAAATAGTTGACACTGTTTGAAACTGACTTAACTTTCTAGTATA
TTTATTGTTTTAGGGAGGGATTATAAGAAATGGGTGTTATAGTTGGCCTC
CTTTTTCCTATTACCTCATACCTCTTTACACTTTTCTTACATTTT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAAATAGAAATTATGGGGATT
TAGGGCTGTATGATGTTAATGCTTGATTAGTCATATATTTTTCTGAGAAT
AGAATATTCTTTGTACCCAAATATTATTAGAAATATCTCAATGGTGGATT
TTGATTTCATGAAAAATTTCTACCAACATAAGTTCTTTGTGACTACTCAT
GTATTTTATGTCCGGTTACATTCCAGTGTTAAAAATAACACTGCACTGTA
CATATTTATATACTGATTTGAAAGTGACTTTCATTCTTGATATTCTTTTG
ATTATGAGTATTTTGTTAACCCACCCCCCCCAGTTATCTTTGCTAGGAAG
AAGATGTTATTTGACTCATAAGAGTAAACTGGAAAATAAGTGTGAACTTT
GGAATTCAGACTATAATTCAGACTGAGATATTCTCAATTCACATATTGGA
GAGCCACTTATTCATACAAAGGTATCCTTTTAACATGGACCACTGAAATA
GGTTTAATCTTGAATAATATTTCAAAGTGTTTTCCAAAGCCTCCAGTACC
TGAGATTGCCCCAAATAGTGCCATATATTTGAATGTTTGCATTCTAGCTT
GGTATAGTGTTTAGGAAAGATTAACAGGTTGTGACCTCTCATCAAAATCT
TGCTAGTGTAGGCTATGGTGTTATCTTTTGGAGGTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_e16.g1 MSMg01no189_e16.g1 CHROMAT_FILE:
MSMg01no189_e16.g1 PHD_FILE: MSMg01no189_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:14 2005
         (284 letters)



>mm_chr17_61144471_61145154
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaatagaaattatggggatttagggctgtatgatgttaatgcttgattagtcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaaatagaaattatggggatttagggctgtatgatgttaatgcttgattagtcatat 260

                                                                       
Query: 61  atttttctgagaatagaatattctttgtacccaaatattattagaaatatctcaatggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttctgagaatagaatattctttgtacccaaatattattagaaatatctcaatggtg 320

                                                                       
Query: 121 gattttgatttcatgaaaaatttctaccaacataagttctttgtgactactcatgtattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattttgatttcatgaaaaatttctaccaacataagttctttgtgactactcatgtattt 380

                                                                       
Query: 181 tatgtccggttacattccagtgttaaaaataacactgcactgtacatatttatatactga 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tatgtccggttacattccagtgttaaaagtaacactgcactgtacatatttatatactga 440

                                                       
Query: 241 tttgaaagtgactttcattcttgatattcttttgattatgagta 284
           |||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 441 tttgaaagtgcctttcattcttgacattcttttgattatgagta 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)