BAC Information

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BAC

Clone NameMSMg01-191B05
Chromosome17 (Build37)
Map Location 91,249,309 - 91,346,332
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191B05.T7 (MSMg01no191_b05.b1)MSMg01-191B05.TJ (MSMg01no191_b05.g1)
ACCAG381216AG381217
length782732
length of high quality
(start - end)
313 (103 - 415)282 (58 - 339)
definitionCHROMAT_FILE: MSMg01no191_b05.b1 PHD_FILE: MSMg01no191_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:33 2005CHROMAT_FILE: MSMg01no191_b05.g1 PHD_FILE: MSMg01no191_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,346,024 - 91,346,332)(91,249,309 - 91,249,590)
sequence
AAACTTCTACCTACCCTCNCAAACATAATCATTCCTTTTTCTTTTTTTTN
NNNCTATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTATTCTGGACTTTATGTGCTATTGTTATCTTCTCTGG
GAAATCTAAATTTACATTATTGAAATATCATATATACAAATGTTTCTTAT
ATTTTACTATTGCAGGATACAGACATTTGTATATACAAGGTAATGAAAAG
GTGTGAATTATGATCTATGCTGAAGTTATGTATAAAAATTATTAAGGCCT
TATTCAGGAAAAGCAATGTTAATTTTGTAGTAAAAACTAACTTCATATTG
TTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTAATTTCT
CTAGCTCCTCCATTGGTTTTTATGCCCACCCCTCCCATAGCTGACTGCGA
TCATCCACTTCTGTGTTTCCTATGCCCCGGCATAACCCCACAAGATAGAG
TTATATTTGGTTCTTTTCACCGAATTCTTGCTAGCGTATGCAACGACGTC
TGCATTTGCAAGCTGATTATGTTATGGATCCCTGCATATGGTAATCTCTA
TATGGCCCATCCTTTCGTCATATCTCCAAATTTTGTCTCTGCAACTCCTT
CCATGTGTGTATTCGTCCCCATCTCAAACATATGTTAAAGTCGTATACCT
TCTCCCTCCCTTCCTTTCTCGACATTTTATTCGATTTAACCCACTCGCTT
TCTTAATAACTTCGTTTAATCCACGATGTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGGGGAAACTACCTCCAGAGTCACTAAATGTGCCCTAAGAAAA
GCAGGATTATTAGAGGAAAGGAGAAAGAATCTAGAGCATTTTGATGAGGA
TTTTGCTCATCCTCACAAGAAAAACATGTTAACAAAAAGGAAAACTGGAG
ATCTGGCTCTAAGTTTAGGTGGTGTGCTCTGGAGGTATGTGCCTCAATTT
AAGTCTAACCATGTGGCTGGTTACTACATATGTAACCGGGCTTCAGTTCC
TCAATGCAAATGGGAATGCAGATGGATACTAACTATATTCTCTTACTGAG
CCACGCCCCTTGACTGAATTAATGGAATCTTACTGCATAGGAAACTGCCA
AGTGAAAAAAAAATGCTCAGTTAATGTTTTATTCTTTATTAGTTTTATTA
TTCTTATTTTTATTGTTGCCACCTAAAATCAGACCACTCAACTGGTATGT
CTCTTCTAATTTTTTGTCTCAATTTGTATAATTAATGACAAAAAGTCATG
CTGGTTTAAAGGATAATAGTAAATGAAAGAAACTATTCCAAAATATGACT
CCAAAAAGGAACATGGTAATGTTCCATTTAAATAATAAAGTTTAGCTCTA
AAATTGAGAATAAAAGGAAGGTGGGGGAAGGACTGATAGGGGTGGGGGCA
AAGGAGACTGCAGTCGTGTGTATTGTTTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_b05.b1 MSMg01no191_b05.b1 CHROMAT_FILE:
MSMg01no191_b05.b1 PHD_FILE: MSMg01no191_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:33 2005
         (313 letters)



>mm_chr17_91345894_91346606
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctattctggactttatgtgctattgttatcttctctgggaaatctaaatttaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaattcctattctggactttatgtgctattgttatcttctctgggaaatctaaatttaca 380

                                                                       
Query: 65  ttattgaaatatcatatatacaaatgtttcttatattttactattgcaggatacagacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttattgaaatatcatatatacaaatgtttcttatattttactattgcaggatacagacat 320

                                                                       
Query: 125 ttgtatatacaaggtaatgaaaaggtgtgaattatgatctatgctgaagttatgtataaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttgtatatacaaggtaatgaaaaggtgtgaattatgatctatgctgaagttatgtataaa 260

                                                                       
Query: 185 aattattaaggccttattcaggaaaagcaatgttaattttgtagtaaaaactaacttcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aattattaaggccttattcaggaaaagcaatgttaattttgtagtaaaaactaacttcat 200

                                                                       
Query: 245 attgttgttccacctatagggttgcagttccctttagctccttgggtaatttctctagct 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attgtttttccacctatagggttgcagttccctttagctccttgggtaatttctctagct 140

                    
Query: 305 cctccattg 313
           |||||||||
Sbjct: 139 cctccattg 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no191_b05.g1 MSMg01no191_b05.g1 CHROMAT_FILE:
MSMg01no191_b05.g1 PHD_FILE: MSMg01no191_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:33 2005
         (282 letters)



>mm_chr17_91249109_91249790
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggaaactacctccagagtcactaaatgtgccctaagaaaagcaggattattagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggggaaactacctccagagtcactaaatgtgccctaagaaaagcaggattattagagga 260

                                                                       
Query: 61  aaggagaaagaatctagagcattttgatgaggattttgctcatcctcacaagaaaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggagaaagaatctagagcattttgatgaggattttgctcatcctcacaagaaaaacat 320

                                                                       
Query: 121 gttaacaaaaaggaaaactggagatctggctctaagtttaggtggtgtgctctggaggta 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaacaaaaaggaaaactggagatgtggctctaagtttaggtggtgtgctctggaggta 380

                                                                       
Query: 181 tgtgcctcaatttaagtctaaccatgtggctggttactacatatgtaaccgggcttcagt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgtgcctcaatttaagtctgaccatgtggctggttactacatatgtaactgggcttcagt 440

                                                     
Query: 241 tcctcaatgcaaatgggaatgcagatggatactaactatatt 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctcaatgcaaatgggaatgcagatggatactaactatatt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)