Query= MSMg01no193_f04.b1 MSMg01no193_f04.b1 CHROMAT_FILE:
MSMg01no193_f04.b1 PHD_FILE: MSMg01no193_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:41 2005
(456 letters)
>mm_chr17_75645741_75646596
Length = 856
Score = 841 bits (435), Expect = 0.0
Identities = 447/451 (99%), Gaps = 2/451 (0%)
Strand = Plus / Minus
Query: 4 ggaattcataatagcatctttctacatggtcatgaacttaaaaggt-aaaaaaaaaaatc 62
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 636 ggaattcataatagcatctttctacatggtcatgaacttaaaaggtaaaaaaaaaaaatc 577
Query: 63 tatgtacagtgctgagtattatgcctgagacatttaattgctaaggaggctatcgctact 122
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 576 tatgtacagtgctgagtattatgcctgagacatttaattgctaaggagactatcgctact 517
Query: 123 atcactgtcatttatcattattatcatcgtcatcatcatcatcatctgaaagttccttgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atcactgtcatttatcattattatcatcgtcatcatcatcatcatctgaaagttccttgt 457
Query: 183 tccagatgcctcaggtcagatgtaaatcatcagactatccagggagtggggtgcatgaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tccagatgcctcaggtcagatgtaaatcatcagactatccagggagtggggtgcatgaag 397
Query: 243 ctgcttagttaaagtgtccacttaaaagtaggtggagcaatattatgaactaaccagtac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgcttagttaaagtgtccacttaaaagtaggtggagcaatattatgaactaaccagtac 337
Query: 303 ctggagctcttgtctctagctgcatatgtatcaaaagatggcctagtcggccatcactgg 362
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccggagctcttgtctctagctgcatatgtatcaaaagatggcctagtcggccatcactgg 277
Query: 363 aaagagaggcccattggacacacaaactttatatgccccagtacaggggaacgccagggc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaagagaggcccattggacacacaaactttatatgccccagtacaggggaacgccagggc 217
Query: 423 caaaaagggggagggggtggggtaggggatt 453
|||||||||||||||||| ||||||||||||
Sbjct: 216 caaaaagggggagggggt-gggtaggggatt 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_f04.g1 MSMg01no193_f04.g1 CHROMAT_FILE:
MSMg01no193_f04.g1 PHD_FILE: MSMg01no193_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:41 2005
(585 letters)
>mm_chr17_75602746_75603731
Length = 986
Score = 888 bits (459), Expect = 0.0
Identities = 536/587 (91%), Gaps = 41/587 (6%)
Strand = Plus / Plus
Query: 1 aatttcattgccatttcctttactttttttt-aaaatgggaatgaacattatccatcagt 59
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 201 aatttcattgccatttcctttacttttttttaaaaatgggaatgaacattatcaatcagt 260
Query: 60 aattaaatgttgtatgaggggttcagaagagatctgccaccttccttcaggatctactgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaaatgttgtatgaggggttcagaagagatctgccaccttccttcaggatctactgt 320
Query: 120 catttggcccattgctaatatggagagctgagagtgttcctctggacctaaggaatagga 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 catttggcccattgctaatatggagagctgagagtgttcctctcgacctaaggaatagga 380
Query: 180 agttcaagagattttatctcatatataactgtgtcaggatgcagagaatatagatgctct 239
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 381 agttcaagagattttatgtcatatataactgtatcaggatgcagagactatagatgctct 440
Query: 240 taaggtaatctgggtatagtcgtaggtgtaaacacatatctgagacttgggaatcaaaac 299
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 441 taaggtaatctgggtatagtcataggtgtagacacatatctgagacttgggaatcaaaac 500
Query: 300 tgcaggaaacgttcttacacacatggagaaaaaaccagaagctacctcaacggccacagg 359
|||||||||||||||||||||||||
Sbjct: 501 tgcaggaaacgttcttacacacatg----------------------------------- 525
Query: 360 gatgctgactgaaactaccacttcacttactgcattgataatcttcttagtttggtgttg 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ----ctgactgaaactatcacttcacttactgcattgataatcttcttagtttggtgttg 581
Query: 420 gttgggataaaaataacttaagaatctatgttgtcaaaaatacttcttcctggtcctcat 479
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 582 gttgggataaaaataacttaagaatccatgttgtcaaaaatacttcttcctcgtcctcat 641
Query: 480 ataaacctcaatagtgtttatctttgggactcc-agcctctgtggcaggactgcaaagtt 538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 642 ataaacctcaatagtgtttatctttgggactcccagcctctgtggcaggactgcaaagtt 701
Query: 539 gacaccattggcatggttttcaaaccattgacatttctttggcccca 585
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gacaccattggcatggttttcaaaccattgacatttctttggcccca 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
