BAC Information

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BAC

Clone NameMSMg01-196F19
Chromosome17 (Build37)
Map Location 12,779,027 - 12,812,843
singlet/doubletdoublet
Overlap geneSlc22a2
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192
Downstream geneSlc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196F19.T7 (MSMg01no196_f19.b1)MSMg01-196F19.TJ (MSMg01no196_f19.g1)
ACCAG384502AG384503
length757754
length of high quality
(start - end)
287 (46 - 332)289 (80 - 368)
definitionCHROMAT_FILE: MSMg01no196_f19.b1 PHD_FILE: MSMg01no196_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:53 2005CHROMAT_FILE: MSMg01no196_f19.g1 PHD_FILE: MSMg01no196_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,812,560 - 12,812,843)(12,779,027 - 12,779,314)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCCTAATCTTTCTTCCCAGTTGGACTCAGAAGTGTCTCTAAAGG
CCTGTGGAGGAGTTCATTCCGGGAGCCCAGGTTCTTACCTCTGCATCTTC
TCAGCATCCTCGATGGTCTCAGGCAGAGCCTTCCCTTTGGTCTCAGGTAG
CAATAGCACAAGTCCCCCAGCAACAAGGCCAACCACAGCTGAGACACAGA
TGAGAATCACATCAAGAGCCAAAAGGCAGTCTCTAAAATTAGGATCCCCT
TGTTTCCCTCTCTCTTTTGGGGGGTATGTTTTCCCATTCTTACTTATAGA
CTCACATGTCATTTTTGTTCACCCCCCCCCCCACCATAAGTAATTCATCG
ATTGTTCAATTACTACCCCCCCACAAATACTATTAAGCAAATGAATTCCT
TAAGATTTTGAGACGGGGCTAGTCCACTGTATGGCGACGTTGCCATXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTACGCTCGTCTATGCACC
TAAGACCATTATTGGACCTTTGCCGCCGTTGAGCATTTATGGTCGTTAGC
TGTAAATGATTTTTGACCCTTGCTATGCGACATTCCTTTTTGCTCGCTTC
CTTTTGCCGCGTTCTTTAGCTCCTTTTTGGTTTATCTAACTCTAATACGT
GTCACCCAATCTTTTTCCAGGAAAAATAGGTACTTTTTTTCCCCTGTCAC
TTTCTCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGCAGAATGGATGTTAGAT
CACCTCTTGTCTGCTCAATTTCCTCCTGCCTCCCAAGCAAACCAGACCAA
ATGTAACAGTCACCGCAGGACACCTTGACTCTCCCTATTTTATTTATTTA
TTTTTAACCAAAAAAGCCAGATAAGAGTCGTTCAAAGCTTGCTTCCCTCT
AGCTGTGCATGTGTACCAAGTGTCTGCCTCCTCTCACATTTGTGTCTTAC
GAATAGAAGGGAGAAGATGAATTTTTCTGTAAGTCTATGTCTGTAAGTCA
AGCCACTACCTGCTTTCTGCTTATACAGCCAGTGCTTTAGCCAAATGCCA
GACTCATCCTGTCAGATGGAACAACGCTAAATGGATCCCAGGGGAAATCG
TTTGGCAATGTATAGAAAGTTAGCATAGGTTAAGAGCGGCTGGGTTATTG
GCACTCAGTTCAAGAGAAGGTACCACACAGCATCACCTGAACCTCTGGGG
CTCCCAGGAGCTCCCAGCTAGGAGTATTCAAAGTGCTCTGAGATGAATGT
GTCTAAGGAAATTCTAATAGCGTTTTTTCTCCCTCTTCCCCCCACCTCCA
CCCTCTTCTTCTCTTCTGGCTTGGACGGACCCTCCACATCTGGAAAGTTT
AACCTAGGGTGTGCTTATTCCTGTATGCTGGACCCGTTCCAGTCATTAAC
GAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_f19.b1 MSMg01no196_f19.b1 CHROMAT_FILE:
MSMg01no196_f19.b1 PHD_FILE: MSMg01no196_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:53 2005
         (287 letters)



>mm_chr17_12812357_12813043
          Length = 687

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcctaatctttcttcccagttggactcagaagtgtctctaaaggcctgtgga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggaattcagcctaatctttcttcccagttggactcagaagtgtctctaaaggcctgtgga 428

                                                                       
Query: 64  ggagttcattccgggagcccaggttcttacctctgcatcttctcagcatcctcgatggtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggagttcattccgggagcccaggttcttacctctgcatcttctcagcatcctcgatggtc 368

                                                                       
Query: 124 tcaggcagagccttccctttggtctcaggtagcaatagcacaagtcccccagcaacaagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcaggcagagccttccctttggtctcaggtagcaatagcacaagtcccccagcaacaagg 308

                                                                       
Query: 184 ccaaccacagctgagacacagatgagaatcacatcaagagccaaaaggcagtctctaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccaaccacagctgagacacagatgagaatcacatcaagagccaaaaggcagtctctaaaa 248

                                                       
Query: 244 ttaggatccccttgtttccctctctcttttggggggtatgtttt 287
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttaggatccccttgtttccctctctcttttggggggtatgtttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no196_f19.g1 MSMg01no196_f19.g1 CHROMAT_FILE:
MSMg01no196_f19.g1 PHD_FILE: MSMg01no196_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:53 2005
         (289 letters)



>mm_chr17_12778827_12779515
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcagaatggatgttagatcacctcttgtctgctcaatttcctcctgcctcccaagca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggcagaatggatattagatcacctcttgtctgctcaatttcctcctgcctcccaagca 260

                                                                       
Query: 61  aaccagaccaaatgtaacagtcaccgcaggacaccttgactctccctattttatttattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccagaccaaatgtaacagtcaccgcaggacaccttgactctccctattttatttattt 320

                                                                       
Query: 121 atttttaaccaaaaaagccagataagagtcgttcaaagcttgcttccctctagctgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttttaaccaaaaaagccagataagagtcgttcaaagcttgcttccctctagctgtgca 380

                                                                       
Query: 181 tgtgtaccaagtgtctgcctcctctcacatttgtgtcttacgaatagaagggagaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtaccaagtgtctgcctcctctcacatttgtgtcttacgaatagaagggagaagatg 440

                                                           
Query: 241 aatttttctgtaagtctatgtctgtaagtcaagccactacctgctttc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttttctgtaagtctatgtctgtaagtcaagccactacctgctttc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)