BAC Information

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BAC

Clone NameMSMg01-197C13
Chromosome17 (Build37)
Map Location 16,329,271 - 16,394,511
singlet/doubletdoublet
Overlap genenone
Upstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197C13.T7 (MSMg01no197_c13.b1)MSMg01-197C13.TJ (MSMg01no197_c13.g1)
ACCAG385002AG385003
length699730
length of high quality
(start - end)		654 (46 - 699)289 (128 - 416)
definitionCHROMAT_FILE: MSMg01no197_c13.b1 PHD_FILE: MSMg01no197_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:56 2005CHROMAT_FILE: MSMg01no197_c13.g1 PHD_FILE: MSMg01no197_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,329,271 - 16,329,921)(16,394,227 - 16,394,511)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTGCCAGGAGCCCTGAGTGGCCACACTGTTCTGAGAAACAGG
TAGGTGATTTTCACTATCCTGCTCACCCTCCGTTCAGACCTCTTCAGAAT
TGCTCATAGTTTTTCTGCAGTCTGTCTGTAGGAACTGTTCTGTTACTCAC
CTCCACTCTCTGGGGACCCAACTTCATGGACACAGGGACCCTGTAGTTCT
TTCACAATGTTTTATTTTATCCTTCTGTCTACCCCATCACCATTCACTAT
GTCATTTGCAGAGCTGTGGAAATGCTCTCTAACAGGAACACCACAGCCAA
CACATATAGCTGGGATCTAGAGTGGACAGCAGCAACCAAAGAAAGGACGT
CTGCATACCTAGAACAGATAGCTACACCAAGAAATACATCAAACATCATA
ATTCTGAAAGCCTATATCCCAGTACAAAAACACTTATGTGAATAACAAAG
ACATATGTAGCCTTCTCCAGAAGCTAGACATTCTATTGCAATAGACCCCA
AGAAAAGCAATTTAGGAGAAGCACAAGACAAGGACTTCAAAATAGCAATT
ATGAGTATGTTTAAGAGCCTTAAAGAGTATATAAAAATGTCTTAATGAAG
TGTGTGAAAACACAAATATTGAAAACATTTCAAAACATAAAGTAGAATT

CGATGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGTCCCCTCCCCAGGTTTCTGACTG
TGAGTCCCAAGCATGACAGGTACTCTAGTTAATGAAAATACTCTGAGGCT
CAAGAAGACATTCACATTTGATTATATATGCATTGCTTTCTTATGGACAA
AACATATAGGTAATTCATTTACAAATGAACAAAATGCTCACTTTTGAAGT
TTTGAGATGCTAGGAGAAAATAACTACTTAGTGTAAATTCCTAATATACG
CATATGCTTTCCTTATCTTATGAGAATGGCAAGATGTGTCCCCATGCTAA
GAGATAGCCAAGCTGGAGGTGATGTTGACTCATCATTTTAAGGACTATAG
GTTTCCGATTTGCGTCACAAACACACAGTTGGAACATGAAAGTTGTATTA
ACCAGGGTTCTCTAGAGGAACATAGCTGATAGAACACATGAATATATATT
ATCAAAAATAATATATCAAAAAGAGTAGCTATTAATGTAGCAAACAATCT
GTGGTTCAGCTAGTCCCACAATAGCTATCCCCTGTTACTTGTTCAGTATA
TGTTGGAATCCTGAGGATGTAGGTCCTAATATCAGTGAAAGAATACAGCA
GCAGCAGGATAGACGGACTTACTAGCAAGAATGAGGGAAAAGCAAGAAAA
ATCAAAGCTTCCTTCTTCCATCTCCTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_c13.b1 MSMg01no197_c13.b1 CHROMAT_FILE:
MSMg01no197_c13.b1 PHD_FILE: MSMg01no197_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:56 2005
         (654 letters)



>mm_chr17_16329068_16330121
          Length = 1054

 Score = 1220 bits (631), Expect = 0.0
 Identities = 646/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttctgccaggagccctgagtggccacactgttctgagaaacaggtaggtgat 63
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 ggaattccttctgccaggagccctgagtggccacactattctgagaaacaggtaggtgat 263

                                                                       
Query: 64  tttcactatcctgctcaccctccgttcagacctcttcagaattgctcatagtttttctgc 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcactatcctgctcaccctccattcagacctcttcagaattgctcatagtttttctgc 323

                                                                       
Query: 124 agtctgtctgtaggaactgttctgttactcacctccactctctggggacccaacttcatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtctgtctgtaggaactgttctgttactcacctccactctctggggacccaacttcatg 383

                                                                       
Query: 184 gacacagggaccctgtagttctttcacaatgttttattttatccttctgtctaccccatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacacagggaccctgtagttctttcacaatgttttattttatccttctgtctaccccatc 443

                                                                       
Query: 244 accattcactatgtcatttgcagagctgtggaaatgctctctaacaggaacaccacagcc 303
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 accattcactatgtcatttgcagacctgtggaaatgctctctaacaggaacaccacagcc 503

                                                                       
Query: 304 aacacatatagctgggatctagagtggacagcagcaaccaaagaaaggacgtctgcatac 363
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacacataaagctgggatctagagtggacagcagcaaccaaagaaaggacgtctgcatac 563

                                                                       
Query: 364 ctagaacagatagctacaccaagaaatacatcaaacatcataattctgaaagcctatatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctagaacagatagctacaccaagaaatacatcaaacatcataattctgaaagcctatatc 623

                                                                       
Query: 424 ccagtacaaaaacacttatgtgaataacaaagacatatgtagccttctccagaagctaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccagtacaaaaacacttatgtgaataacaaagacatatgtagccttctccagaagctaga 683

                                                                       
Query: 484 cattctattgcaatagaccccaagaaaagcaatttaggagaagcacaagacaaggacttc 543
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cattctattgcaataggccccaagaaaagcaatttaggagaagcacaagacaaggacttc 743

                                                                       
Query: 544 aaaatagcaattatgagtatgtttaagagccttaaagagtatataaaaatgtcttaatga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaatagcaattatgagtatgtttaagagccttaaagagtatataaaaatgtcttaatga 803

                                                              
Query: 604 agtgtgtgaaaacacaaatattgaaaacatttcaaaacataaagtagaatt 654
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agtgtgtgaaaacacaaatattgaaaacatttcaaaacataaagtagaatt 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no197_c13.g1 MSMg01no197_c13.g1 CHROMAT_FILE:
MSMg01no197_c13.g1 PHD_FILE: MSMg01no197_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:56 2005
         (289 letters)



>mm_chr17_16394027_16394715
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttaatgaaaatactctgaggctcaagaagacattcacatttgattatatatgcattgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gttaatgaaaatactctgaggctcaagaagacattcacatttgattatatatgcattgct 426

                                                                       
Query: 61  ttcttatggacaaaacatataggtaattcatttacaaatgaacaaaatgctcacttttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttcttatggacaaaacatataggtaattcatttacaaatgaacaaaatgctcacttttga 366

                                                                       
Query: 121 agttttgagatgctaggagaaaataactacttagtgtaaattcctaatatacgcatatgc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 365 agttttgagatgctaggagaaaataaccacttagtgtaaattcctaatatacgcatatgc 306

                                                                       
Query: 181 tttccttatcttatgagaatggcaagatgtgtccccatgctaagagatagccaagctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttccttatcttatgagaatggcaagatgtgtccccatgctaagagatagccaagctgga 246

                                                        
Query: 241 ggtgatgttgactcatcattttaaggactataggtttccgatttg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggtgatgttgactcatcattttaaggactataggtttccgatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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