BAC Information

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BAC

Clone NameMSMg01-197M08
Chromosome17 (Build37)
Map Location 10,032,144 - 10,032,435
singlet/doubletsinglet
Overlap genenone
Upstream genePde10a, 1700010I14Rik, EG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197M08.T7 (MSMg01no197_m08.b1)MSMg01-197M08.TJ (MSMg01no197_m08.g1)
ACCAG385364
length764808
length of high quality
(start - end)
---295 (136 - 430)
definitionCHROMAT_FILE: MSMg01no197_m08.b1 PHD_FILE: MSMg01no197_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:46 2005CHROMAT_FILE: MSMg01no197_m08.g1 PHD_FILE: MSMg01no197_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AAATTAACTCTGACGATATCTATATGCGTGTGTATGTAATAGATCCTTTG
ACCGATTCCTGACACTGCTCTGCAGAGAAAATGTCTTGGTGCTGTGAATG
GCCCTTGATTATCACCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCCTCCGGAAGAATCTTAACCATTCTGCCCTATTACCAAAATCTTC
TCCCGTATACGCGTTCTTATTATTATTGTGCATCCCTACCCCTCCTTTTT
TTTCCACCCACCCC
NAAGCGCCAAATGATAATTTTAACCTTCCTTCCTTCTCTTTTTTNTTATA
CCATTTTACCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTCCTGGAGAAG
GTCAAATGGGTAGCTCTACCCCAGGGAGCCCGTCACCACGACAAGGTTGT
GCTGTAAAGATGAAGCTGCTGAGTGCGGTAACCCTCCCTTGTCTGGGGCT
GGAGGGTTAGCACGCTTGCCTGGACTGATGGAGTTGCACCTACTACCCAC
CCTCTTCACCTTGCATATATGATGACTGTTGTTAGAATTAGCAAATGCCT
AGGCCGGCAGAGGGATGCAGTCAGTAAATAGTGTCCCCCTTGAATATCAG
AGCTAACGTTCACTTTCTATGTTCTTCCCCTTACCTAAGTGAATATGAAC
CAAGGCTCCACTCGGTTATTGCCCCCCCCAAGGTCTCAGGCTTGTAAGCA
TCGTGATCTTACGAGCAACCTACGGCCCATGGCTTCTCTAAGCAAGTACT
GTTTACTCGGTTTCTCTCTATCTCGCTATCTAATTCTCTCTCTCTCTCTC
TACTTTTTTTCTCTCTCTCTCTTTGTTCATCCTTTACTGTCTTATCATTT
ATTATCCTATTTCTCCTCTTGTTTTATTTTATTTTCCTATTCCTTTTCTC
TCACCTCTTTTTTTCTTTCACCCTCCTTATTATTAACTTTACACATCTAC
ATTTACTTACCTTTTTTCTTTTTTATACCTTCTCTCCCTACACACATATC
TTGTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_m08.g1 MSMg01no197_m08.g1 CHROMAT_FILE:
MSMg01no197_m08.g1 PHD_FILE: MSMg01no197_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:46 2005
         (295 letters)



>mm_chr17_10031944_10032638
          Length = 695

 Score =  487 bits (252), Expect = e-142
 Identities = 282/292 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtcctggagaaggtcaaatgggtagctctaccccagggagcccgtcaccacgacaag 60
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 201 tctgtcctggagaaggtcaaatgggtagctctaccccagggaggctgtcaccacgacaag 260

                                                                       
Query: 61  gttgtgctgtaaagatgaagctgctgagtgcggtaaccctcccttgtctggggctggagg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtgctgcaaagatgaagctgctgagtgcggtaaccctcccttgtctggggctggagg 320

                                                                       
Query: 121 gttagcacgcttgcctggactgatggagttgcacctactacccaccctcttcaccttgca 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagcacgcttgcctggactgatggagttgcacctactacccaccctcttcaccttgca 380

                                                                       
Query: 181 tatatgatgactgttgttagaattagcaaatgcctaggccggcagagggatgcagtcagt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tatatgatgactgttgttagaattagcaaatgcctaggccagcagagggatgcagtcagt 440

                                                               
Query: 241 aaatagtgtcccccttgaatatcagagctaacgttcactttctatgttcttc 292
           ||| ||  |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 441 aaagagcatcccccttgaatatcagagctaacgtccactttcaatgttcttc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)