Query= MSMg01no199_b16.b1 MSMg01no199_b16.b1 CHROMAT_FILE:
MSMg01no199_b16.b1 PHD_FILE: MSMg01no199_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:33 2005
(669 letters)
>mm_chr17_72467201_72468268
Length = 1068
Score = 1236 bits (639), Expect = 0.0
Identities = 657/663 (99%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 6 ggaattccaagcactgcccaccacctggggtttgaaccagacgctcagacacaccaggta 65
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 206 ggaattccaagcactggccaccacctggggtttgaaccagacactcagacacaccaggta 265
Query: 66 aacagtctgtcaatggaaccaggcctgcagcctctcaaggctaatttggaatgctatatt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aacagtctgtcaatggaaccaggcctgcagcctctcaaggctaatttggaatgctatatt 325
Query: 126 ccacacagcttgtcttcatgtgtctgaaaatgcttttggatttgggaaaaatatatactg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccacacagcttgtcttcatgtgtctgaaaatgcttttggatttgggaaaaatatatactg 385
Query: 186 gaacaggaacagcctcggaacctgctctattgcaaacagatcttagtctccctgctcagt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 gaacaggaacagcctcggaacctgctctattgcaaacagatcttagtctccctgcccagt 445
Query: 246 gcacaggaatccctcaccccttcttctatttgcaccccagacccaatgtcccctcacatg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcacaggaatccctcaccccttcttctatttgcaccccagacccaatgtcccctcacatg 505
Query: 306 gtgcagactcaccaagcctttctgaagcacagctctgctaatgggatgcctttggtaaac 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgcagactcaccaagcctttctgaagcacagctctgctaatgggatgcctttggtaaac 565
Query: 366 ccccacgacatccacctctcagataaagataaaaagcttcagcttggccccaaggcccct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ccccacgacatccacctctcagataaagataaaaagcttcagcttggccccaaggcccct 625
Query: 426 ccgtgctgtggttgctagcatctctctcacactccctggcaggcactcagccagatgcca 485
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 626 ccgtgctgtggttgctagcatctctctcacactccccggcaggcactcagccagatgcca 685
Query: 486 ggtgatctagactgtttgccagttgcctcctgtacttgctgcctgcaaaaccttggctca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggtgatctagactgtttgccagttgcctcctgtacttgctgcctgcaaaaccttggctca 745
Query: 546 gactaagcacgcttgaccacggagcctttcttgagataattgtcagctgagtcatctgcc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gactaagcacgcttgaccacggagcctttcttgagataattgtcagctgagtcatctgcc 805
Query: 606 tacagaacctttttttttttctgagtccagacaatgctttccttcctttataagctaaaa 665
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 806 tacagaacctttttttttt-ctgagtccagacaatgctttccttcctttataagttaaaa 864
Query: 666 aaa 668
|||
Sbjct: 865 aaa 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_b16.g1 MSMg01no199_b16.g1 CHROMAT_FILE:
MSMg01no199_b16.g1 PHD_FILE: MSMg01no199_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:33 2005
(300 letters)
>mm_chr17_72558332_72559031
Length = 700
Score = 580 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Minus
Query: 1 ttcaggttcttttatgtccacatgcatgtcatcttccaggaaagggggacacagtgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcaggttcttttatgtccacatgcatgtcatcttccaggaaagggggacacagtgcctc 441
Query: 61 atttcacccacactcttccctttgtagctcaattgtctaccaactcaggccagcacagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttcacccacactcttccctttgtagctcaattgtctaccaactcaggccagcacagag 381
Query: 121 ccattgctcctttatttagaaatgaacacatgagacattggataatcttcactctaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccattgctcctttatttagaaatgaacacatgagacattggataatcttcactctaactg 321
Query: 181 cagacaatgtccccaagaatcttgatggagacaatgcagttgagactctctctaggagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagacaatgtccccaagaatcttgatggagacaatgcagttgagactctctctaggagca 261
Query: 241 cccccccccccgcccagtctggacaaaggcactggaacccaacacaggaaacctcagacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cccccccccccgcccagtctggacaaaggcactggaacccaacacaggaaacctcagacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
