BAC Information

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BAC

Clone NameMSMg01-199O08
Chromosome17 (Build37)
Map Location 37,526,187 - 37,526,565
singlet/doubletsinglet
Overlap genenone
Upstream geneGm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1
Downstream geneOlfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199O08.T7 (MSMg01no199_o08.b1)MSMg01-199O08.TJ (MSMg01no199_o08.g1)
ACCAG386657AG386658
length728759
length of high quality
(start - end)		367 (57 - 423)335 (84 - 418)
definitionCHROMAT_FILE: MSMg01no199_o08.b1 PHD_FILE: MSMg01no199_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:37 2005CHROMAT_FILE: MSMg01no199_o08.g1 PHD_FILE: MSMg01no199_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAGAGACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCAAGTCTACCTATCACAGACATACTTGCACACCA
ATGTACAACACTACTCACAGTATATAAGTTATGGAAAGAACCTAGGTGTC
TGTTTACAGAGGAATGAATAAAGGGAATATTACATAACATACACATAAAC
ACACACACACACACACACACACACACACACATCCACCAATGCTTGAGATT
TAAGGAATAACATAGTTTTGTTGTTGGCATGAAAACCTAGCAATTAGCAG
TAAACATATTAAATGAATTAAGGAAGTGCCAATTTTAGTTCCCAGGTTAT
AGCTACGTAAACAGGTCATCTACAGGTATCTACAGGTTAAAAGATACAAA
AAAATCACATATGTTATATGATACCACCCACGAGAAAAACTCTCTAGACT
TTATTATGTAGAGGAACCAGGGGGAATAATAGAAGAGGGCTCAGCAAAGA
AATAATAGATGCATACAACCCAATAGGGTAGAGTAGATTCAATAGATTTC
ACTTACTTATGGAAAGGCTCTTATGTAGCCAAATACCATGTACATACTAT
GAGTGTCACTGTTATTGAATATTATGAAAAAAGTGCATAGGTTAAATGGA
ATCTACTATTTACAGTCCCCCGCGTCTGATCACATCTTTGATTATATGCT
AATTTGTCATAATTTGTTATTCAAACCA

TTTTCTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATTCCG
AATGGCAGAGAAGCACCTGAAAAAAAGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGTTTGCAAGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATGGACATAGTACTACCGG
AAGATCCAGCAATACCTCTCCTGGGCAAATATCCTGAAGATGTCCCAACT
GGTAAGAAGGACATATGTTCCACCCACCCCACAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATTGATAC
AGAAAATGTGGCACATTTGCTCAATGGATTACTATTCAGCTATTATAATG
AACGAATTTTATGAAATTCCTACGTACATGATTGTACCTGCACGGTCATC
TTTCTGAGTGATTTACCCCAATCATATAGGATTTCATTTACTATACACTC
ACATAATAACTGGAAATTTACCCCTTATATTCACTTATTCCCCCGATTTA
CACACACTTTTTCCGCTTTTCTCACATAAACTTCTAATATACCCTTTCAT
CTTTACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_o08.b1 MSMg01no199_o08.b1 CHROMAT_FILE:
MSMg01no199_o08.b1 PHD_FILE: MSMg01no199_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:37 2005
         (367 letters)



>mm_chr17_37525999_37526765
          Length = 767

 Score =  652 bits (337), Expect = 0.0
 Identities = 361/379 (95%), Gaps = 16/379 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagtctacctatcacagacatacttgcacaccaatgtacaacactactcacag 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gaattccaagtcgacatatcacagacatacttgcacaccaatgtacaacactactcacag 248

                                                                       
Query: 65  tatataagttatggaaagaacctaggtgtctgtttacagaggaatgaataaagggaatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tatataagttatggaaagaacctaggtgtctgtttacagaggaatgaataaagggaatat 308

                                                                       
Query: 125 tacataacatacacataa----------------acacacacacacacacacacacacac 168
           ||||||||||||||||||                ||||||||||||||||||||||||||
Sbjct: 309 tacataacatacacataaacacacacacacacacacacacacacacacacacacacacac 368

                                                                       
Query: 169 acacacatccaccaatgcttgagatttaaggaataacatagttttgttgttggcatgaaa 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acacacatccaccaatgcttgagatttaaggaataacatagttttgttgttggcatgaaa 428

                                                                       
Query: 229 acctagcaattagcagtaaacatattaaatgaattaaggaagtgccaattttagttccca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acctagcaattagcagtaaacatattaaatgaattaaggaagtgccaattttagttccca 488

                                                                       
Query: 289 ggttatagctacgtaaacaggtcatctacaggtatctacaggttaaaagatacaaaaaaa 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggttatagctacgtaaacaggtcatctacaggtatctacaggttaaaagatacaaaaaaa 548

                              
Query: 349 tcacatatgttatatgata 367
           |||||||||||||||||||
Sbjct: 549 tcacatatgttatatgata 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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